Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_H23
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    28   1.4  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   4.1  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   4.1  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    26   5.5  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   5.5  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   9.5  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 267 MTTASVPSTASCTESGSRTFPLTISTLSLRCSGS 166
           +TT S  +TASCT   S T   T +++S  C+G+
Sbjct: 762 VTTTSTTATASCTLPISYTSTPTTTSISGTCNGA 795


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -1

Query: 264 TTASVPSTASCTESGSRTFPLTISTLSLRCSGSFAGSRTNARTSRPFLRAA--STAFKPI 91
           +T+SVP+    + S + + P+++++ S   SGS   S T   T      +    T   PI
Sbjct: 259 STSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPI 318

Query: 90  TPVEPKITT 64
           T   P +++
Sbjct: 319 TTSAPSLSS 327


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/54 (27%), Positives = 31/54 (57%)
 Frame = +3

Query: 144 RSYVTQQNSQNILKTRSR*SKEMFSNQTRYMRPSKEQTLSSSP*GLGTTWRRLR 305
           R YV+Q+N     K      +++++ + RY  P K++++S +P  +  ++R LR
Sbjct: 19  RGYVSQENKVKRRKRLFNAIRKLWNERRRYRMP-KDESISPTP--ISYSFRSLR 69


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 360 LTFFALIASIMFLVPSDKSEVGARSFLVPRVM 265
           L   A + ++M +VP+    +G RS   P+VM
Sbjct: 4   LKLVASVLALMTIVPAQAGLIGKRSVFKPKVM 35


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 244 DGLMYRVWFENISFDYLDLVFKMFW 170
           D L    WF ++S DY+D + +  W
Sbjct: 21  DSLKKPNWFTDVSIDYVDELIEHLW 45


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 433 ERRPQENVPGSERQRLKLDRRVSATLHRRPKPRNDY 540
           +R  QE +   ERQ+LKL+   +  + +R  P  ++
Sbjct: 158 QRLRQEQILNKERQQLKLNNFFTKGVEKRIAPNENF 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,040
Number of Sequences: 5004
Number of extensions: 50007
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)