Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_H20
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    97   2e-21
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    28   1.1  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   5.8  

>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 96.7 bits (230), Expect = 2e-21
 Identities = 44/69 (63%), Positives = 50/69 (72%)
 Frame = +2

Query: 359 AVLHIALRNRQNKPILVNGKDVSTDVNAVLEHMKEFSDQVVSGQWKGYTGKAITDVINIG 538
           AV H ALRN   KP+ VNG+DV   V  VL HMKEFSD V SG WKGYTGK I  ++N+G
Sbjct: 102 AVFHPALRNVSEKPMKVNGQDVMPGVRKVLRHMKEFSDAVRSGAWKGYTGKPIKSIVNVG 161

Query: 539 IGGSDXGPL 565
           IGGSD GP+
Sbjct: 162 IGGSDLGPV 170



 Score = 84.2 bits (199), Expect = 1e-17
 Identities = 43/91 (47%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
 Frame = +1

Query: 91  AYQKLQQYYNVNSTKINMLQLFQQDRERFEKFSFCIP--TPNDGDILLDYSKNRINSDVF 264
           A+Q +Q +Y      + + +LF +D  RFEKFSF        DG IL D+SKN I  +  
Sbjct: 11  AWQAVQTHYESVGKHLVLKELFAKDSSRFEKFSFTFNGLKEEDGPILFDFSKNLITEETV 70

Query: 265 KLLLDLAKSRNVEQARDAMFSGQKINFTEDR 357
           +LL+ LAK  NVE  RDA+F+G+ INFTEDR
Sbjct: 71  ELLVKLAKEANVEGLRDALFAGEHINFTEDR 101


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +2

Query: 377 LRNRQN--KPILVNGKDVSTDVNAVLEHMKEFSDQVVSGQWKGYTGKAITDVIN 532
           + NR N  KP+ +  KD   +     EH K+  D  +SG      G  +++ IN
Sbjct: 668 ITNRLNAKKPLFIESKDFGDNPLDTFEHYKQSVDAGLSGMLFSVIGGRLSEGIN 721


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 341 TSQKTGAVLHIALRNRQNKPILVNGKDVSTDVNAVLEHMKEFS 469
           +S  +   LH+A R  Q KP   N     + V + ++  K FS
Sbjct: 171 SSTNSNIKLHLAARKYQTKPEKFNENSSISQVTSAIKATKAFS 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,635
Number of Sequences: 5004
Number of extensions: 46016
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)