Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_H17
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 172 2e-43
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 170 7e-43
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 170 1e-42
06_03_0290 - 19193707-19193752,19193822-19194090 28 5.7
05_05_0171 - 22936215-22936590,22937359-22937550,22937591-22938561 28 5.7
02_02_0398 - 9777596-9778146,9778229-9778400,9778522-9778639,977... 28 5.7
10_08_0851 - 21065832-21065948,21066361-21066705,21067181-210674... 28 7.5
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236... 28 7.5
08_02_1034 + 23823194-23823307,23823399-23823620,23823984-238243... 27 9.9
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 172 bits (419), Expect = 2e-43
Identities = 84/131 (64%), Positives = 104/131 (79%)
Frame = +3
Query: 198 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 377
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
Query: 378 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 557
+VKKWQTLIEA++DVKTTDGY+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 558 ITRDVTNSELR 590
+ ++ +L+
Sbjct: 172 MANQASSCDLK 182
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/35 (65%), Positives = 30/35 (85%)
Frame = +2
Query: 98 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGNE 202
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQG +
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTK 55
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 170 bits (414), Expect = 7e-43
Identities = 84/131 (64%), Positives = 102/131 (77%)
Frame = +3
Query: 198 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 377
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQGRNVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLR 111
Query: 378 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 557
+VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 558 ITRDVTNSELR 590
+ + +L+
Sbjct: 172 MANQASTCDLK 182
Score = 60.1 bits (139), Expect = 2e-09
Identities = 23/35 (65%), Positives = 31/35 (88%)
Frame = +2
Query: 98 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGNE 202
VDPF++KDWYD+KAP++FS R +G TLV+RTQG +
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTK 55
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 532 QSERKCVKSLHATSLTLNSGXVVNKLIPDSIAKDIEK 642
Q RK V+ + + T + +V+K IP+ I K+IEK
Sbjct: 163 QIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEK 199
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 170 bits (413), Expect = 1e-42
Identities = 83/131 (63%), Positives = 103/131 (78%)
Frame = +3
Query: 198 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 377
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
Query: 378 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 557
+VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 558 ITRDVTNSELR 590
+ ++ +L+
Sbjct: 172 MVNQASSCDLK 182
Score = 60.1 bits (139), Expect = 2e-09
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = +2
Query: 98 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGNE 202
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQG +
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTK 55
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 334 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 423
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>05_05_0171 - 22936215-22936590,22937359-22937550,22937591-22938561
Length = 512
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -2
Query: 133 DIVPIFASEWV--DNLLLNTFF---TALRQAFIFPDRHVQNTNLRKPT 5
+ + A +WV D L+ NT+ + + P RH Q T +R+PT
Sbjct: 292 EAIAAHAGDWVGVDYLVFNTYIWWMNTVNMKVVLPTRHDQFTVIRRPT 339
>02_02_0398 -
9777596-9778146,9778229-9778400,9778522-9778639,
9778751-9779014,9779287-9779354,9779520-9780145,
9780257-9780412,9780528-9780625,9780741-9780832,
9780940-9781011
Length = 738
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 102 THSLAKIGTMSRLRLCSARGKSAPRLSTVPRXTKIASEGLKGRVF 236
T +LA I S++ LCS PRLS ++ G G +F
Sbjct: 374 TQTLASINITSKVVLCSPPSLMPPRLSLGDIIGRVIKAGANGLIF 418
>10_08_0851 -
21065832-21065948,21066361-21066705,21067181-21067489,
21067574-21067648,21067754-21067917,21067994-21068432
Length = 482
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 532 QSERKCVKSLHATSLTLNSGXVVNKLIPDSIAKDIEK 642
Q +R C +H ++ +N+G + + +PDS + K
Sbjct: 293 QQKRDCATQIHKAAVAINTGVLGDMEVPDSFMAILPK 329
>04_03_0983 +
21423086-21423280,21423330-21423404,21423531-21423632,
21423721-21423774,21423880-21423972,21424526-21424618,
21427329-21427433,21427517-21427615,21427701-21427997,
21428512-21428622
Length = 407
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 376 LSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETSK 233
+++ +R+ PW L++ R T +A + +KD SA + +S E K
Sbjct: 274 ITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMK 321
>08_02_1034 +
23823194-23823307,23823399-23823620,23823984-23824309,
23824648-23824777,23825145-23825441,23825550-23825815,
23827835-23828333,23828902-23828993,23829571-23829735,
23829817-23830204,23830275-23830393,23830494-23830524,
23830675-23830880,23830970-23831014,23831120-23831201,
23832210-23832398,23834499-23834602,23834669-23834759,
23835097-23835225,23835425-23835556,23835779-23835949,
23836143-23836171,23836214-23836301,23836313-23836391,
23836666-23836844
Length = 1390
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -1
Query: 629 LAMESGINLFTTXPEFRVSDVACNDFTHFLSDCSDLSVLGVARLALAQGVLIGET 465
L + + +N F P F + C++ + SDLS+L + LA +G T
Sbjct: 683 LVVRTFVNSFENDPRFNSATAICHERQQMNTSESDLSLLMLGLTCLAAITKLGST 737
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,073,267
Number of Sequences: 37544
Number of extensions: 373311
Number of successful extensions: 1009
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -