Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_H04
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 47 2e-06
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 32 0.083
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 31 0.11
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 27 1.8
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 27 1.8
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 2.4
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp... 27 3.1
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po... 26 4.1
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 26 5.5
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 5.5
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 5.5
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 26 5.5
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 25 7.2
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 7.2
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 25 9.5
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 9.5
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 25 9.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 47.2 bits (107), Expect = 2e-06
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +1
Query: 430 SVKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQ 609
+V+ E +YR + I V G ++P P E +GFP Y+ +K G PT IQ Q
Sbjct: 92 NVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQ 151
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/16 (50%), Positives = 14/16 (87%)
Frame = +2
Query: 608 RGWPIALSGKNFVGIA 655
+ WP+A+SG++ VGI+
Sbjct: 151 QAWPMAMSGRDMVGIS 166
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 31.9 bits (69), Expect = 0.083
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 469 RSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQ 603
+ D +I++ G D+P+P + E +G P + LK +P+ IQ
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQ 276
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 364 SILHNQILKGTKLRELQILRFYSVKTEQKKEDDDYRSDNS 483
S L N KG+KLR + +Y VK +Q+K+ D +S N+
Sbjct: 66 SYLSNATFKGSKLRIEEARPYYLVKLQQEKKIADLQSTNN 105
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = +1
Query: 433 VKTEQKKEDDDYRSD-NSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQ 609
+K E D+ R+ + I + G D P P G + + G KPT IQ+Q
Sbjct: 388 LKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQ 447
Query: 610 GM 615
+
Sbjct: 448 AI 449
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +1
Query: 313 IVETNVFHTHIIPKVQYSILHNQILKGTKLRELQILRFYS-VKTEQKKEDDDYRSDNSIT 489
I+ NV + I PK+ L Q + G+ + + RF+ + EQ+ +
Sbjct: 684 ILNRNVDKSKIDPKLIRKTLPFQNINGSLVSGFVVKRFFEIISKEQEASSQQENIQKAYE 743
Query: 490 VIGQDIPS-PFVDIEASGFPEYIKTFLK 570
+I ++ P+ + + F E+ KTF++
Sbjct: 744 IIEKEFPTIGSAENHIAQFLEFWKTFME 771
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 403 RELQILR--FYSVKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFP 546
R+L I R F + E + E + YR+ + ++ D+P FV+ S +P
Sbjct: 697 RQLVINREAFEDMDPESRAEIEGYRAGTYVRIVINDVPFEFVEHFDSRYP 746
>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +3
Query: 327 CISHSHYSQGSIFYIAQSNIKRYKTTRATNLKILFC 434
CIS H FY + ++Y+++ A I+ C
Sbjct: 334 CISEVHLDNHQTFYALEKIFQKYESSEAVPFCIILC 369
>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +2
Query: 131 LAIHINAR--KCVFIYSYLNFFIEIGYRVSWLKTKIN 235
+ +H+ A +F ++Y++FF+ G + W++TK +
Sbjct: 185 IVLHLTAVVISIIFSFAYMDFFLPRGGFLVWVETKFS 221
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 329 YFTLTLFPRFNILYCTIKY*KVQNY 403
YF L FN YC +Y V NY
Sbjct: 461 YFFLLSHEMFNPFYCLFEYSSVDNY 485
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 266 Y*NERSCPNYYLTNNK**KQMYFTLTLF 349
Y N SCPN+Y ++K K+ Y LT+F
Sbjct: 14 YQNLCSCPNHYAQHSK-NKRNYHQLTIF 40
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = +1
Query: 382 ILKGTKLRELQILR-----FYSVKTEQKKEDDDYRSDN 480
ILK ++ +Q LR YSV TE + D RSDN
Sbjct: 234 ILKDSQKERIQALRNKAIKTYSVSTESAERIDSIRSDN 271
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = -1
Query: 466 NHHL-PFSAQFLQNKILRF 413
N HL PFS FL+N ++RF
Sbjct: 85 NQHLFPFSISFLKNDVVRF 103
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 237 ENGFKCAHKVIKTKGVVQIITLQTTNSRN 323
+NG K K+++ KG I ++TT N
Sbjct: 134 DNGIKALEKIMRQKGRFDNIVIETTGIAN 162
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 403 RELQILRFYSVKTEQKKEDDDYRSD 477
R + +RF S E +EDDDY S+
Sbjct: 3 RRARSIRFSSDDNEDNEEDDDYYSN 27
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 9.5
Identities = 21/97 (21%), Positives = 42/97 (43%)
Frame = +1
Query: 307 QQIVETNVFHTHIIPKVQYSILHNQILKGTKLRELQILRFYSVKTEQKKEDDDYRSDNSI 486
Q++ + N F T + P V Y N++ + I+ Y+ ++ +DDDY+ + S
Sbjct: 567 QRLDDENGFLTLLEPPVNYE---NEVESSSGEN---IVSMYTGHSDLNDDDDDYQDEESY 620
Query: 487 TVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTV 597
+ D D ++ P + +K + +P V
Sbjct: 621 SYASDDDDES--DEDSDEGPTLLSLRMKKRKAVEPNV 655
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 161 VFIYSYLNFFIEIGYRVSWLKTKIN*KWL 247
VF Y+ L+ + YRV WLK++ + WL
Sbjct: 2088 VFEYALLSTTGQDLYRVLWLKSRSSEAWL 2116
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 645 TKFLPLKAIGHPL*LYHSWFCDTLH 571
T FLP+ I HP LY S + TLH
Sbjct: 273 TFFLPMPLISHP--LYSSSWIPTLH 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,853
Number of Sequences: 5004
Number of extensions: 56217
Number of successful extensions: 172
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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