Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_H02
         (565 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    27   1.9  
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    26   3.3  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   4.4  
SPCC970.06 |||cargo receptor for soluble proteins |Schizosacchar...    25   5.8  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    25   5.8  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    25   7.7  

>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 420 VARTDCFHATIRKRCASLVRRVRASSNTVL 331
           + RTD F+  +R+ CA+  R ++  S T L
Sbjct: 100 ILRTDKFYLLMRRFCAAAFRDIQTRSKTAL 129


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 20  EMCNAKTWGLQFCFTLLQHRFQWILIINLTF 112
           ++ N  T GL++C  LL +R   ILI   T+
Sbjct: 128 KITNGNTIGLEYCLRLLVNRGDCILIEKYTY 158


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 453  PRFRSASGMFAVARTDCFHATIRKRCASLVRRVRASSNT 337
            P FRS   +  VA  D  HA+  +R  S   R +ASS +
Sbjct: 906  PAFRSEEAVVEVADEDHPHASEAERAHSYSNRKQASSES 944


>SPCC970.06 |||cargo receptor for soluble proteins
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 482 LNWTRIVLHARCV*SAHRVLISFK*XF 562
           ++WTRI++H   V +   V+I FK  F
Sbjct: 210 ISWTRILVHILSVTACAMVVIGFKAKF 236


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 400 SCDHTQAVRILGTQSAG*LQHGPSHDCKQTGLPLYKTL 287
           S DH      LG    G L  GP ++C  +   + KTL
Sbjct: 73  SYDHNSDDTPLGKSKVGYLSPGPGYECDSSPALIDKTL 110


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 228 QYGAAAVILVRGELDC 181
           QYG  + +LVR +LDC
Sbjct: 245 QYGRCSSLLVRSQLDC 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,117
Number of Sequences: 5004
Number of extensions: 53063
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)