Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_H02
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90...    29   3.4  
10_02_0049 - 4580417-4580602,4580955-4581833                           27   7.8  
02_05_0956 - 33064104-33066425                                         27   7.8  

>04_01_0083 +
           904473-905167,905247-905347,905902-905994,907322-907968
          Length = 511

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 420 VARTDCFHATIRKRCASLVRRVRASSNTVLAMIANRLDCP 301
           VAR + +   +R RC +   R  A  N +L      L CP
Sbjct: 341 VARFEAYRDAVRTRCRATAARAAADGNELLRFHPAALACP 380


>10_02_0049 - 4580417-4580602,4580955-4581833
          Length = 354

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 459 RLPRFRSASGMFAVARTDCFHATIRKRCASLVRRV 355
           R  R  S  G+F+  R D   A + ++ A LVRRV
Sbjct: 124 RALRRLSTVGLFSPRRLDAMRALLEEKVAELVRRV 158


>02_05_0956 - 33064104-33066425
          Length = 773

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/68 (23%), Positives = 26/68 (38%)
 Frame = -2

Query: 501 TIRVQFNNAFRAVLRLPRFRSASGMFAVARTDCFHATIRKRCASLVRRVRASSNTVLAMI 322
           T RV+FN      +  P     + M  VAR D     I+    +    V    N +++ +
Sbjct: 545 TRRVEFNIISGTSMACPHVSGIAAMLKVARPDWSPTAIKSAMMTTAYEVDNGGNAIMSSV 604

Query: 321 ANRLDCPY 298
             R   P+
Sbjct: 605 NGRAAGPF 612


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,515,203
Number of Sequences: 37544
Number of extensions: 358989
Number of successful extensions: 770
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)