Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_G14
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    28   1.0  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    26   4.1  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   4.1  

>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +1

Query: 454 FNSFALSEQDPESRSSKTIAAAFGSN 531
           F S  LS  +P+S+S K I AA GSN
Sbjct: 330 FKSLRLSYLEPKSQSEKGIRAATGSN 355


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 71  YRARKCVYRRASENFVGSEHASK-VNEQGDNLMNFEDI 181
           Y  R CV  R S ++ G+ + ++ VN QG +  NF +I
Sbjct: 199 YNLRLCVITRHSPDYAGTRYFTRGVNAQG-SAANFNEI 235


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +1

Query: 304 VKTHVSDTDNIAKEFVEWIKRDKVSSKNDFLTFLNRLNLEIIGVVAFNERFNSF 465
           VK + S+   I   F+E I RD  S   D L  +NR++    G     E FN+F
Sbjct: 125 VKYYFSERREIYNRFLE-IMRDFKSQALDTLGVINRVSELFNGYPQLIEGFNTF 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,507
Number of Sequences: 5004
Number of extensions: 53330
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)