Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_G14
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0169 - 1396657-1396710,1396801-1396843,1397440-1397904,139...    29   3.2  
07_03_0613 + 19959206-19959700,19960210-19960657,19960753-199609...    28   7.4  
07_01_0827 - 6664723-6665346,6666636-6667559                           28   7.4  

>08_01_0169 -
           1396657-1396710,1396801-1396843,1397440-1397904,
           1397999-1399395
          Length = 652

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
 Frame = +2

Query: 74  RARKCVYRRASENFVGSEHASKVNEQGDNLMNFEDIPGPRSYPIIGTLHKYLPLIATDPI 253
           R R+   RR +++  GS H S  ++ G+ +M  E   GPR +P    +         + +
Sbjct: 316 RRRQSKKRREAQD--GSWHGSDDDDDGELIMEIEMGTGPRRFPYHKLVDATKSFAPEEKL 373

Query: 254 GGDSEAYFKRISRVH-KVLKLTSRTPIISQKNSLSGSKETRCHLKMI 391
           G   +  F  + R + + L L       ++ +S  G KE +  +K+I
Sbjct: 374 G---QGGFGAVYRGYLRELGLAVAIKRFAKNSSKQGRKEYKSEIKVI 417


>07_03_0613 +
           19959206-19959700,19960210-19960657,19960753-19960940,
           19961317-19961637
          Length = 483

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +1

Query: 241 NGPDWWRLRSIFQKNFTSPQSVKTHVSDTDNIAKEFVE--WIKRDKVSSKNDFLTFLNRL 414
           +G +  ++R   Q NF SP+ V  +VS  D   +  V+  W+    V      L    RL
Sbjct: 119 SGEELKQVRGALQ-NFLSPEMVIRYVSKMDEEVRRHVKVNWVGHKTVK----VLPLAKRL 173

Query: 415 NLEIIGVVAFNERFNS 462
            L+II  V F +   S
Sbjct: 174 TLDIICSVIFGQEAGS 189


>07_01_0827 - 6664723-6665346,6666636-6667559
          Length = 515

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 182 PGPRSYPIIGTLHKYLP 232
           PGP + P+IG++H ++P
Sbjct: 38  PGPSTLPLIGSIHHFVP 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,451,511
Number of Sequences: 37544
Number of extensions: 299991
Number of successful extensions: 758
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)