Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_G10
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical ...    97   1e-20
Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...    95   5e-20
AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical ...    54   7e-08
U41540-2|AAK39230.1|  444|Caenorhabditis elegans Suppressor/enha...    28   5.0  
U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protei...    28   5.0  
AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin SE...    28   5.0  
AF016446-7|AAC24174.1|  330|Caenorhabditis elegans Serpentine re...    28   5.0  

>AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1a protein.
          Length = 459

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 52/121 (42%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
 Frame = +3

Query: 282 NSTSSRLMYALMLVLVTIVCCITLAPGLHNELQKLP-FCTNATDSTVTGLLPGNFKVDCD 458
           +ST++R+MYA +L   T + CI L PG+ N+L +   FC    +            + C 
Sbjct: 35  SSTTTRIMYAFLLFTSTFLSCIMLLPGIQNKLAENKWFCEGLNEYA---------GISCA 85

Query: 459 EAVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVXXXXXXAFF 638
            A G+ AVYR+  AT  F+LL  LIMIGVK SKD R+ IQNGFW  KYL++       FF
Sbjct: 86  HATGFQAVYRVCAATASFYLLFMLIMIGVKDSKDGRSSIQNGFWFFKYLILGALIVGFFF 145

Query: 639 I 641
           I
Sbjct: 146 I 146


>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score = 94.7 bits (225), Expect = 5e-20
 Identities = 49/120 (40%), Positives = 68/120 (56%)
 Frame = +3

Query: 282 NSTSSRLMYALMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVTGLLPGNFKVDCDE 461
           NST++R+MYALML+  T +  + L PG+  +L +  +  +  +            V+C+ 
Sbjct: 35  NSTTTRIMYALMLISATFMAVVMLLPGVQKKLVENKWLCDGLNEYAG--------VNCEH 86

Query: 462 AVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQNGFWAIKYLLVXXXXXXAFFI 641
           A+GY AVYR+      FF L  L+M GV SSKD R+ IQNGFW  KYLL+       FFI
Sbjct: 87  AIGYQAVYRVCAGAASFFFLFMLLMFGVSSSKDGRSSIQNGFWFFKYLLMFGIIGGFFFI 146


>AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1b protein.
          Length = 389

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +3

Query: 282 NSTSSRLMYALMLVLVTIVCCITLAPGLHNEL-QKLPFCTNATDSTVTGLLPGNFKVDCD 458
           +ST++R+MYA +L   T + CI L PG+ N+L +   FC    +            + C 
Sbjct: 35  SSTTTRIMYAFLLFTSTFLSCIMLLPGIQNKLAENKWFCEGLNEYA---------GISCA 85

Query: 459 EAVGYLAVYRITFATCLFFLLMALIM 536
            A G+ AVYR+  AT  F+LL  LI+
Sbjct: 86  HATGFQAVYRVCAATASFYLLFILIV 111


>U41540-2|AAK39230.1|  444|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein12 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 245 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 343
           LFT ++   +L  F + PS +    G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177


>U35660-1|AAA85511.1|  461|Caenorhabditis elegans membrane protein
           protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 245 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 343
           LFT ++   +L  F + PS +    G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177


>AF171064-1|AAD50991.1|  444|Caenorhabditis elegans presenilin
           SEL-12 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 245 LFTMLFSMSILHQFHLLPSYVCTNAGAGNYCVL 343
           LFT ++   +L  F + PS +    G GNY VL
Sbjct: 145 LFTTIYVQEVLKSFDVSPSALLVLFGLGNYGVL 177


>AF016446-7|AAC24174.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein21 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 136 FYVLQFTFQITSICILILLYAQYK 65
           FY+L F+ + +++CI  + Y +YK
Sbjct: 94  FYILTFSIECSAVCISEMFYFRYK 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,381,389
Number of Sequences: 27780
Number of extensions: 288879
Number of successful extensions: 756
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)