Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_G08
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48240-1|CAA88283.1|  312|Caenorhabditis elegans DIF-1 protein.        27   3.6  
X76115-1|CAA53721.1|  312|Caenorhabditis elegans carrier protein...    27   3.6  
U61949-5|AAB03153.2|  312|Caenorhabditis elegans Differentiation...    27   3.6  
Z81545-2|CAB04438.1|  212|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>Z48240-1|CAA88283.1|  312|Caenorhabditis elegans DIF-1 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 3   AFPAEASCSFNAEYW*MMAANNYFRVHSRRNPNT 104
           AFPA A+C F  E    +AA  YF +     P+T
Sbjct: 272 AFPANAACFFGLEL--TLAAFRYFGIGGHPTPST 303


>X76115-1|CAA53721.1|  312|Caenorhabditis elegans carrier protein
           (c1) protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 3   AFPAEASCSFNAEYW*MMAANNYFRVHSRRNPNT 104
           AFPA A+C F  E    +AA  YF +     P+T
Sbjct: 272 AFPANAACFFGLEL--TLAAFRYFGIGGHPTPST 303


>U61949-5|AAB03153.2|  312|Caenorhabditis elegans Differentiation
           abnormal protein 1 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 3   AFPAEASCSFNAEYW*MMAANNYFRVHSRRNPNT 104
           AFPA A+C F  E    +AA  YF +     P+T
Sbjct: 272 AFPANAACFFGLEL--TLAAFRYFGIGGHPTPST 303


>Z81545-2|CAB04438.1|  212|Caenorhabditis elegans Hypothetical
          protein F49H6.2 protein.
          Length = 212

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 65 ICSHHLPIFRVETT 24
          IC HHLPIF++  T
Sbjct: 33 ICDHHLPIFQILAT 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,186,757
Number of Sequences: 27780
Number of extensions: 68771
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)