Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_G07
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    29   0.44 
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    27   1.8  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   3.1  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    26   5.5  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   7.2  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    25   9.5  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 291 VLDRKLVTEAPLVKD--IIKYHATYHQDVYSQNFGN 392
           ++D  +V   P+++   + +Y+  YHQ  Y+QNF N
Sbjct: 402 IVDPNMVQYGPILQPGYVPQYYPVYHQTPYTQNFPN 437


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +3

Query: 294 LDRKLVTEAPLVKDIIKYHATYHQDVYSQNFGNSVLGYVTPWNNKGYDIAKI 449
           L R L  +    K+IIK   T+ QD    + G    GYVT     GY I +I
Sbjct: 184 LHRALKGKEEEFKNIIKIGRTHMQDATPLSLGQEFSGYVT---QVGYGIERI 232


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +2

Query: 431 LRHSEDMGTKIQLHLTSMATNKKTVTKYLHHNWAP*CRXCLDEICETEXC 580
           + + +D  + +   LTS         K+LHH+ +P     L  I + E C
Sbjct: 261 ISNGKDAPSPVLKDLTSYTQEVIVCRKFLHHSLSPSIHSTLSSISKMESC 310


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 154 LIKCNVLRHPSKSFCC*TFVLLLYRH 231
           L++    RHP KS C    + LLY H
Sbjct: 31  LVEAVTWRHPVKSMCLGLTITLLYLH 56


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 222 LSPPSDKKGQKGVKPQEGPRKSNVLDR 302
           LSPPS    Q  ++ Q  PR+ ++ DR
Sbjct: 82  LSPPSFTHSQPQIQAQPVPRRPSLFDR 108


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -3

Query: 446 LRYVVTFVVPRRNIT*DRVSEILRINVLVVG 354
           LRY    ++P RN+T   +S+++R+  +++G
Sbjct: 123 LRYDAN-ILPIRNLTASHISKLVRVPGIIIG 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,087
Number of Sequences: 5004
Number of extensions: 53649
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)