Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_G07
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0728 + 24686642-24687004,24687935-24688008,24689104-246891...    81   1e-15
01_04_0093 + 15956960-15956962,15957282-15957575,15957873-159580...    31   1.1  
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204...    29   2.4  
04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052...    28   7.5  
08_02_1565 + 27897683-27897742,27897879-27898009,27898168-278982...    27   9.9  

>01_05_0728 +
           24686642-24687004,24687935-24688008,24689104-24689184,
           24689256-24689337,24689596-24689693,24689722-24689860,
           24691259-24691613,24691923-24692173
          Length = 480

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 36/95 (37%), Positives = 58/95 (61%)
 Frame = +3

Query: 348 HATYHQDVYSQNFGNSVLGYVTPWNNKGYDIAKIWAPKFNYISPVWLQIKRQSPNIYIIT 527
           HAT  ++   ++F N VL YVTPWN+KGYD+AK+++ KF +ISPVW  +K    N  ++ 
Sbjct: 123 HATVSENRSRRHFRNPVLAYVTPWNSKGYDMAKLYSTKFTHISPVWYDLKSDG-NKLVLE 181

Query: 528 GLHDVXHAWMKSVRQXGARNNIKILPRIIFXNWXG 632
           G H+    W+  ++  G+     +LPR++   + G
Sbjct: 182 GQHNFDAKWVSELQSNGS----LVLPRVVLEAFPG 212


>01_04_0093 +
           15956960-15956962,15957282-15957575,15957873-15958091,
           15958538-15958624,15959572-15959718,15961933-15962028,
           15962138-15962338
          Length = 348

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -2

Query: 510 LVTVFLFVAILVRCS*ILVPISSLCRNLCCSTA*HNLRQSFRN 382
           L  +FLF+ +L   S  LV      RNL   T  HNL Q +RN
Sbjct: 155 LQVLFLFLGLLSLWSVDLVYFGGGVRNLILDTIGHNLSQKYRN 197


>11_06_0223 - 21419128-21419397,21419493-21419747,21420243-21420414,
            21420530-21420757,21420916-21421049,21421309-21421392,
            21421554-21421760,21421871-21422203,21422343-21422449,
            21422823-21422988,21423127-21423230,21423347-21423507,
            21423595-21424495,21424642-21424732,21424837-21425127,
            21425491-21425575,21425665-21425747,21427653-21427773,
            21427785-21428260
          Length = 1422

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 279  RKSNVLDRKLVTEAPLVKDIIKYHATYHQDVYSQNFGNSVLGYVTPWNNKGYD 437
            RK+  L ++L T  P  +D+  +   Y Q+ YSQ   N    Y + W N  Y+
Sbjct: 1115 RKNQELIKELSTPPPGYQDL-SFPTKYSQNFYSQCIANFWKQYRSYWKNPPYN 1166


>04_04_0917 -
           29404341-29404519,29404610-29404744,29404898-29405225,
           29405313-29405532,29405653-29406647,29407233-29407493,
           29407534-29407872,29409309-29409497
          Length = 881

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +3

Query: 147 VSSNKMQCFKTSIQVILLLNVCFATLSPPSDKKGQKGVKPQEGPRKSNVLDRKLVTEAPL 326
           VS     C K+  ++  LL+  F   + P D        P + P K+N+L+  +V EA  
Sbjct: 577 VSVQTSTCIKSKFRLARLLS--FRLYNVPMDVSPSGICGPFKQPEKANLLEMLIVDEAAQ 634

Query: 327 VKD 335
           +K+
Sbjct: 635 LKE 637


>08_02_1565 +
           27897683-27897742,27897879-27898009,27898168-27898236,
           27899859-27899930,27901006-27901078,27902324-27902402,
           27903061-27903067,27904524-27904581,27905681-27905890
          Length = 252

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 200 QQNDLDGCLKTLHFIR*NRFSLDN 129
           QQ   DGCLKTL  +R   + L N
Sbjct: 105 QQRSRDGCLKTLDLVRTEFYDLRN 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,736,527
Number of Sequences: 37544
Number of extensions: 303281
Number of successful extensions: 682
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)