Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_G05
(562 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 30 1.5
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 2.5
02_04_0083 + 19566476-19566539,19566781-19567006,19567206-195673... 29 3.4
08_02_0315 + 15680170-15680304,15681166-15681318 28 4.4
03_02_0464 - 8683232-8684596 28 4.4
06_03_0279 + 19100499-19100927 28 5.9
05_03_0685 + 16992899-16993570 28 5.9
04_04_1230 + 31929261-31929386,31929497-31929643,31929974-319300... 28 5.9
12_02_1224 + 27158810-27161366,27161593-27161969 27 7.7
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 27 7.7
11_06_0204 + 21191611-21192807 27 7.7
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653... 27 7.7
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +3
Query: 327 LNGGEYRGXWVRWDSGXISAGREGEAIPFISWSDPEP 437
L G +R WV W I AG G F+ PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 429 PEPFPXTTSDSAQAGVPQAPGKSXCHRLHL*QLPLYAATPWLT 557
P P P +D +Q+ + APG+ H LHL L A PW T
Sbjct: 549 PPPPPPAGADPSQS-LANAPGQLTVHHLHL--LLSIANAPWAT 588
>02_04_0083 +
19566476-19566539,19566781-19567006,19567206-19567389,
19569483-19569582,19570015-19570122,19570373-19570452,
19570566-19570644,19570774-19570832,19570938-19571006,
19571577-19571690,19571772-19571840,19572340-19572361,
19572455-19572522,19573630-19573715,19574220-19574349,
19575032-19575133,19575211-19575279
Length = 542
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = +3
Query: 288 TKPDKVEIESPGILNGGEYRGXWVR---WDSGXISAGREGEAIPFISWSDPEPFPXTTSD 458
T D + PG+ GG G W R W+ GR G+ + W P P T+SD
Sbjct: 35 TVEDAAAGDEPGVGRGGGGHGRWRRALTWNMDGGGCGRAGDDLRRGPWMMPP--PVTSSD 92
>08_02_0315 + 15680170-15680304,15681166-15681318
Length = 95
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 393 EGEAIPFISWSDPEPFPXTTSDSA 464
EGE F+ W+ P+PFP T S +A
Sbjct: 14 EGEV--FVLWAQPDPFPETISIAA 35
>03_02_0464 - 8683232-8684596
Length = 454
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 487 GACGTPACAESDVVXGKGSGSDQDMNGIASPS 392
G CG+P C ++ +G D++GIA+ S
Sbjct: 334 GVCGSPYCCTCSILRHGFAGKQADVDGIATYS 365
>06_03_0279 + 19100499-19100927
Length = 142
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/61 (24%), Positives = 23/61 (37%)
Frame = -1
Query: 502 HXDFPGACGTPACAESDVVXGKGSGSDQDMNGIASPSRPAEXXPLSQRTXIPRYSPPLRI 323
H + P + S G+G + + PL+ R +PR SPPL +
Sbjct: 70 HLCLSSSFAPPLLSFSRADGGRGEATRPSRRHAPVDAEEEPPLPLATRAPLPRRSPPLAL 129
Query: 322 P 320
P
Sbjct: 130 P 130
>05_03_0685 + 16992899-16993570
Length = 223
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 463 AESDVVXGKGSGSDQDMNGIASPSRPAEXXP 371
++ V G G G D+D +A+PSR P
Sbjct: 51 SDGGVPGGGGGGDDEDAESLAAPSRAVSPKP 81
>04_04_1230 +
31929261-31929386,31929497-31929643,31929974-31930065,
31930159-31930255,31930533-31930576,31930708-31930796,
31931083-31931174,31931266-31931412,31931539-31931644,
31931736-31931812,31932281-31932352,31932738-31932865,
31932947-31933142,31933206-31933407,31933642-31933691
Length = 554
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 320 GAFNFNLIGLGSIFPDDALSVSPASNHHLIHRIRFLRAC 204
G++NF+L L + D A + PAS+ L+ +R R C
Sbjct: 11 GSYNFHLRSLSAASRDSAAAADPASDPILLESVR--RVC 47
>12_02_1224 + 27158810-27161366,27161593-27161969
Length = 977
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +3
Query: 357 VRWDSGXISAGREGEAI-PFISWS 425
V+W SG ++AG EGEA+ + WS
Sbjct: 894 VQWVSGKVAAGGEGEALDKRLEWS 917
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Frame = -1
Query: 424 DQDMNGIASPSRPAEXXPLSQRTXI-----PRYSPPLRIP 320
D+ + SP+ PA P S + + PRY PPLR P
Sbjct: 324 DRAASPARSPASPARRGPQSPQRRVSPAQSPRYQPPLRKP 363
>11_06_0204 + 21191611-21192807
Length = 398
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 219 SDPMYEVMIGGWGNAKSVIRKNRTKPDKVEIESPGILNG 335
S +Y G WG+A ++ R++ D V++ PG+ G
Sbjct: 195 SAAIYSSETGAWGDAIALEREHPDPDDAVKVGKPGVQVG 233
>06_03_0793 +
24662506-24663512,24664470-24664787,24664996-24665323,
24665465-24665887,24665960-24666252,24666332-24666605,
24666856-24667358,24667464-24667785,24667875-24668220,
24668339-24668997,24669524-24669625,24669656-24670052,
24670155-24670270,24670360-24670386
Length = 1704
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 475 TPACAESDVVXGKGSGSDQDMNGIASPSRPAEXXPLSQR 359
TP ++ G GSG D DM S S ++ L QR
Sbjct: 505 TPGSMDNHTTNGDGSGMDYDMQPDTSSSDISDSSSLEQR 543
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,155,253
Number of Sequences: 37544
Number of extensions: 315864
Number of successful extensions: 977
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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