Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_G03
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    83   2e-17
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    81   1e-16
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    79   5e-16
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   1.5  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    26   3.4  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.5  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.5  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   4.5  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   5.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.8  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 83.0 bits (196), Expect = 2e-17
 Identities = 34/61 (55%), Positives = 52/61 (85%)
 Frame = +3

Query: 69  LAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 248
           L  +GGK +P+A+D+E +LS+VGIEA+ E+++ +I ELNGKD+++LIAAG EKL+++P G
Sbjct: 9   LLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTG 68

Query: 249 G 251
           G
Sbjct: 69  G 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 80.6 bits (190), Expect = 1e-16
 Identities = 34/61 (55%), Positives = 52/61 (85%)
 Frame = +3

Query: 69  LAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 248
           L  +GGK +P+A+D+E +LS+VGIEA+ E+++ +I+ELNGK++E+LIAAG EKLS++P  
Sbjct: 9   LLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSA 68

Query: 249 G 251
           G
Sbjct: 69  G 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 78.6 bits (185), Expect = 5e-16
 Identities = 32/61 (52%), Positives = 52/61 (85%)
 Frame = +3

Query: 69  LAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMPVG 248
           L  +GGK +P+A+D+E +LS+VGIE++ E+++ +I EL+GKD+++LIAAG EKL+++P G
Sbjct: 9   LLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSG 68

Query: 249 G 251
           G
Sbjct: 69  G 69


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -3

Query: 253 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSP----SASIPTELRIFSTSAAAGVVL 86
           PPP     SFS    I+ ++ +P SS  T  + SP    S+ +P+ + I S S ++  VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245

Query: 85  PPS 77
           P S
Sbjct: 246 PTS 248


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = -3

Query: 229 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAK*IRGHV 50
           SF  P+A +   S P+SS+ +F + S +++ P+     + S  A    P +T+  I    
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATSFSIINKE 510

Query: 49  THFLSPN 29
               SPN
Sbjct: 511 KPARSPN 517


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -3

Query: 181 SSVITFLSFSPSASIP--TELRIFSTSAAAGVVLPPSTA 71
           SSV T LS S S+SIP  +     STS ++  V+P S++
Sbjct: 8   SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSS 46


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 379 TKLYKSTRRWSLFQFMF 429
           TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -3

Query: 196 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTA 71
           T LP ++V T  SFS SAS  T     +++    +V PPST+
Sbjct: 37  TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTS 76


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -3

Query: 133 TELRIFSTSAAAGVVLPPSTAK*IRGHVTHFL 38
           T   +   S   G VLPP + K   GH   F+
Sbjct: 75  TATHVHGASGFEGAVLPPPSRKENEGHAVDFI 106


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
 Frame = -3

Query: 250 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVV 89
           PPTG   S S P         + STS+P+    T  + + S+ +PT     STS      
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTS 234

Query: 88  LPPSTAK*IRGHVTHFLSP 32
           +P   +  +   +T  + P
Sbjct: 235 IPTGGSSSLSTPITPTVPP 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,488,620
Number of Sequences: 5004
Number of extensions: 22034
Number of successful extensions: 93
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)