Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_F22
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 85 8e-18
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 58 1e-09
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 56 6e-09
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 55 1e-08
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 52 6e-08
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 52 7e-08
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 48 1e-06
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 48 2e-06
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 45 1e-05
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 43 3e-05
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 43 3e-05
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 42 6e-05
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 41 2e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 40 4e-04
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 38 0.001
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 36 0.007
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 35 0.012
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 32 0.063
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 31 0.19
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 30 0.34
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 30 0.34
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 30 0.34
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 29 0.78
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 1.0
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 28 1.0
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 27 1.8
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 27 3.1
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 3.1
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 3.1
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 27 3.1
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 4.2
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 4.2
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 5.5
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 26 5.5
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.5
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 26 5.5
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 26 5.5
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 25 7.3
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 7.3
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 7.3
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.3
SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos... 25 9.6
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 25 9.6
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8... 25 9.6
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 9.6
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 25 9.6
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ... 25 9.6
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 85.0 bits (201), Expect = 8e-18
Identities = 49/163 (30%), Positives = 92/163 (56%), Gaps = 6/163 (3%)
Frame = +1
Query: 184 RTVRILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADV-TPEQVPTNIIDICIP 360
+ VR+++ G+ GVGK+SLI +L+ E+ +P I+IP++ + + V ++D
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKVFPIISIPSNPDSNDDVSLVLVDTQSD 61
Query: 361 EQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKID 540
E +A EI++A+VIC+V+S + +++ +WLP+ R P++L NK +
Sbjct: 62 SNEREYLAAEIKKANVICLVYS--DNYSYERVSIFWLPYFRS---LGVNVPIVLCENKSE 116
Query: 541 LID-----YSVIDNIWDIAEEYPEVDRCIECSAKSLINVSEMF 654
+D +++ + + E+ E++ CI CSA INV+E+F
Sbjct: 117 DLDNYQGLHTIEHEMIPLINEFKEIEACILCSALEKINVNELF 159
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 58.0 bits (134), Expect = 1e-09
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 4/158 (2%)
Frame = +1
Query: 193 RILLLGEPGVGKTSLILSLVTEEFTE-HVPPKAEEITIPA-DVTPEQVPTNIIDICIPEQ 366
++LL+G+ GVGK+ L+L + +TE ++ + I ++ + V I D E+
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 367 SLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDLI 546
+ AH I IV+ V Q++ N + WL + E + +LVGNK D++
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNV-KQWLQEIDRYAVEGVNR--LLVGNKSDMV 126
Query: 547 DYSVIDNIWDIAEEYPEVDRC--IECSAKSLINVSEMF 654
D V++ + +A+E+ + +E SAK NV + F
Sbjct: 127 DKKVVE--YSVAKEFADSLNIPFLETSAKDSTNVEQAF 162
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 55.6 bits (128), Expect = 6e-09
Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 11/165 (6%)
Frame = +1
Query: 193 RILLLGEPGVGKTSLILSLVTEEFTEHV--PPKAEEITIPADVTPEQVPTNIIDICIPEQ 366
+I++LG+ GKTSL L++ T+ + V P E V + ++ D E+
Sbjct: 15 KIVILGDGAAGKTSL-LNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEE 73
Query: 367 SLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDL- 543
+ + HVI I F+VD +++L + T WLP V NCP ++LV K DL
Sbjct: 74 YDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCP---GVKLVLVALKCDLR 130
Query: 544 ------IDYSVIDNIWD--IAEEYPEVDRCIECSAKSLINVSEMF 654
+D+S I + + A + R +ECSAK V+E F
Sbjct: 131 GADEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAF 175
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 54.8 bits (126), Expect = 1e-08
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 1/125 (0%)
Frame = +1
Query: 172 ETVPRTVRILLLGEPGVGKTSLILSLVTEEF-TEHVPPKAEEITIPADVTPEQVPTNIID 348
++ P +++++G+ GKTSL+ F TE+VP E V + V + D
Sbjct: 3 QSQPIRRKLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWD 62
Query: 349 ICIPEQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVG 528
E+ +AH+I + F++D ++L ++T W+ + CP P ILVG
Sbjct: 63 TAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCP---NVPFILVG 119
Query: 529 NKIDL 543
K DL
Sbjct: 120 MKADL 124
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 52.4 bits (120), Expect = 6e-08
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Frame = +1
Query: 187 TVRILLLGEPGVGKTSLILSLVTEEF-TEHVPPKAEEITIPADVTPEQVPTNIIDICIPE 363
T++ +++G+ VGKT L++S T +F +++VP + + + E + D E
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQE 62
Query: 364 QSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDL 543
+ V + FSV + + W P V +CP P ++VG +IDL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCP---GVPCLIVGTQIDL 119
Query: 544 ID 549
D
Sbjct: 120 RD 121
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 52.0 bits (119), Expect = 7e-08
Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Frame = +1
Query: 193 RILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVPTNIIDICIPEQSL 372
+++++G+ G GKT L++ + F E P E I D+T + +I++ + + +
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYI-TDITYGP-NSKVIELALWDTAG 73
Query: 373 EQVAEEIE-----RAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKI 537
++ + + ++VI + FS+D +LN + W P V+ CP R P++LVG K
Sbjct: 74 QEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCP---RTPIVLVGLKA 130
Query: 538 DL 543
DL
Sbjct: 131 DL 132
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 48.0 bits (109), Expect = 1e-06
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Frame = +1
Query: 193 RILLLGEPGVGKTSLILSLVTEEFTE-HVPPKAEEITIPADVTPEQVPTNIIDICIPEQS 369
+++++G+ GKT L++ F E +VP E +V + + D E
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 370 LEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDL 543
+HV+ I FSVD E+L+ + W+ V C P++LVG K+DL
Sbjct: 68 DRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCS---NLPILLVGCKVDL 122
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 47.6 bits (108), Expect = 2e-06
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Frame = +1
Query: 163 MVYETVPRTV-----RILLLGEPGVGKTSLILSLVTEEFTEH----VPPKAEEITIPADV 315
M T P+ V +++LLG+ VGK+SL+L V ++F ++ + T+P D
Sbjct: 1 MASNTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDE 60
Query: 316 TPEQVPTNIIDICIPEQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCP 495
V I D E+ A+ +V+ + + +L K A W+ ++ P
Sbjct: 61 N-TSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEK-AKSWIKELQRQAP 118
Query: 496 EDYRKPVILVGNKIDLIDYSVIDNIWDIAEEYPEVDRCI--ECSAKSLINVSEMF 654
E + L GNK+DL D AE Y + E SAK+ NV+E+F
Sbjct: 119 EGI--VIALAGNKLDLAQERRAVEKAD-AEAYAAEANLLFFETSAKTAENVNELF 170
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 44.8 bits (101), Expect = 1e-05
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
Frame = +1
Query: 190 VRILLLGEPGVGKTSLILSLVTEEFT-EHVPPKAEEITI-PADVTPEQVPTNIIDICIPE 363
+++LL+G+ GVGK+ L+L + FT + + I ++ +++ I D E
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 364 QSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDL 543
+ A I +++ V +++ + + T W V + E+ K IL+GNK D
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVRT-WFSNVEQHASENVYK--ILIGNKCDC 126
Query: 544 IDYSVI--DNIWDIAEEYPEVDRCIECSAKSLINVSEMF 654
D + + +A+E + +E SAK+ +NV E F
Sbjct: 127 EDQRQVSFEQGQALADELGV--KFLEASAKTNVNVDEAF 163
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 43.2 bits (97), Expect = 3e-05
Identities = 40/162 (24%), Positives = 77/162 (47%), Gaps = 7/162 (4%)
Frame = +1
Query: 190 VRILLLGEPGVGKTSLILSLVTEEFTEHVPPK--AEEITIPADVTPEQVPTNIIDICIPE 363
+++++LGE GVGKTS++ V +F++ A+ +T V + V + D +
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTA-GQ 67
Query: 364 QSLEQVAEEIERAHVICI-VFSVDRQETLNKIATYWLPFVRDNCPEDYRK-PVILVGNKI 537
+ + + R C+ V+ V+ ++ + ++ F+ P + P IL+GNK+
Sbjct: 68 ERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKV 127
Query: 538 DLIDYS-VIDNIWDIA--EEYPEVDRCIECSAKSLINVSEMF 654
D+ + ++ +A + E+ E SAK INV E F
Sbjct: 128 DVEEQKRMVSKSKALAFCQARGEIP-YFETSAKEAINVQEAF 168
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 43.2 bits (97), Expect = 3e-05
Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Frame = +1
Query: 190 VRILLLGEPGVGKTSLILSLVTEEFTEHVPPK--AEEITIPADVTPEQVPTNIIDICIPE 363
+++++LG+ GVGKT L+ V ++F+ A+ +T V + V + D +
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTA-GQ 67
Query: 364 QSLEQVAEEIERAHVIC-IVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKID 540
+ + + R C IV++V+ ++ + + + F+ ++ P I+VGN+ID
Sbjct: 68 ERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQID 127
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 42.3 bits (95), Expect = 6e-05
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Frame = +1
Query: 193 RILLLGEPGVGKTSLILSLVTEEFTE-HVPPKAEEITIPADVTPEQVPTNIIDICIPEQS 369
+++++G+ GKT L++ F E +VP E +V V + D E
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDY 67
Query: 370 LEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDL 543
+HVI I F+VD ++L+ + W+ V C P++LV K DL
Sbjct: 68 DRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSS---LPILLVACKADL 122
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 40.7 bits (91), Expect = 2e-04
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 4/158 (2%)
Frame = +1
Query: 193 RILLLGEPGVGKTSLILSLVTEEFTEHVPPK--AEEITIPADVTPEQVPTNIIDICIPEQ 366
+ +L+G+ GVGK++L++ EF E T + +++ I D E+
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 367 SLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDLI 546
+ A IV+ + +Q + + + WL +R++ D ++LVGNK DL+
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVGR-WLKELREHA--DSNIVIMLVGNKTDLL 128
Query: 547 DYSVIDNIWDIAEEYPEVDRC--IECSAKSLINVSEMF 654
+ + A+ + + IE SA NV E F
Sbjct: 129 HLRAVST--EEAQAFAAENNLSFIETSAMDASNVEEAF 164
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 39.5 bits (88), Expect = 4e-04
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Frame = +1
Query: 172 ETVPRTVRILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVPTNIIDI 351
+ VP T +++L+G+ G GKT+ + +T EF K T+ +V P TN +I
Sbjct: 5 QNVP-TFKLVLVGDGGTGKTTFVKRHLTGEFE-----KKYIATLGVEVHPLHFHTNFGEI 58
Query: 352 C--IPEQSLEQVAEEIERAHVI---C--IVFSVDRQETLNKIATYWLPFVRDNCPEDYRK 510
C + + + ++ + + I C I+F V + T + +W VR C
Sbjct: 59 CFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRV-CENI--- 114
Query: 511 PVILVGNKIDLIDYSV 558
P++L GNK+D+ + V
Sbjct: 115 PIVLCGNKVDVKERKV 130
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 37.9 bits (84), Expect = 0.001
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Frame = +1
Query: 184 RTVRILLLGEPGVGKTSLILSLVTEEF--TEHVPPKAEEITIPADVTPEQVPTNIIDICI 357
R +++ LGE VGKTSLI + ++F T + ++ + V + D
Sbjct: 10 RKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 69
Query: 358 PEQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKI 537
E+ + I + V IV+ + + W+ VR +D ++LVGNK
Sbjct: 70 QERFRSLIPSYIRDSSVAIIVYDITNHNSFVN-TEKWIEDVRAERGDDV--IIVLVGNKT 126
Query: 538 DLID 549
DL D
Sbjct: 127 DLAD 130
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 35.5 bits (78), Expect = 0.007
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 9/165 (5%)
Frame = +1
Query: 187 TVRILLLGEPGVGKTSLILSLV----TEEFTEHVPPKAEEITIPADVTPEQVPTNIIDIC 354
T+++ ++G+ +GKTSL+++ V EE T+ + E TI + ++ +I D+
Sbjct: 10 TIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTI--SIRNTEITFSIWDLG 67
Query: 355 IPEQSLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNK 534
+ + + A I +F + R+ TLN I ++ R + IL+G K
Sbjct: 68 GQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWY----RQARGFNKTAVPILIGTK 123
Query: 535 ID-LIDYSVID--NIWDIAEEYPEVDRC--IECSAKSLINVSEMF 654
D + + D I A Y + + + CS INV ++F
Sbjct: 124 YDHFMTFPREDQEEITKQARRYAKAMKASLVFCSTSHSINVQKIF 168
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 34.7 bits (76), Expect = 0.012
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Frame = +1
Query: 193 RILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVT--PEQVPTNIIDICIPEQ 366
RI +LG VGK+SL + V F E P E T ++ ++ T IID ++
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIEN-TFSKNIKYKGQEFATEIIDTAGQDE 66
Query: 367 SLEQVAEEIERAHVICIVFSVDRQETLNKIATYWLPFVRDNCPEDYRKPVILVGNKIDL 543
++ H +V+S+ + + + + E P+++VGNK DL
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWV--PIVVVGNKSDL 123
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 32.3 bits (70), Expect = 0.063
Identities = 20/46 (43%), Positives = 24/46 (52%)
Frame = +1
Query: 196 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVP 333
ILL G PGVGKTSLI +L E + V + T D+ VP
Sbjct: 1562 ILLEGSPGVGKTSLITALARETGHQLVRINLSDQTDLMDLFGSDVP 1607
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 30.7 bits (66), Expect = 0.19
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 184 RTVRILLLGEPGVGKTSLILSLVTEEFTEHVP 279
R VR+LLLG GKT+++ L+ E+ E P
Sbjct: 15 REVRVLLLGLDNAGKTTILKCLLNEDVNEVSP 46
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 29.9 bits (64), Expect = 0.34
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 199 LLLGEPGVGKTSLILSLVTEEFTEHVP 279
+L+GEPGVGKTS+ L + VP
Sbjct: 206 VLIGEPGVGKTSIAEGLARRIIDDDVP 232
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 29.9 bits (64), Expect = 0.34
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +1
Query: 196 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVPTNIID 348
+L+LGE G GK++L+ +L+ + PP + +T V PE PT +I+
Sbjct: 98 VLVLGESGSGKSTLVNTLLNRDV---YPPTQKSLTGDFGVNPE--PTVMIN 143
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 196 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEI 297
+LL G PG GKT L ++ TE E V K E+
Sbjct: 691 VLLYGPPGTGKTLLAKAVATELSLEFVSIKGPEL 724
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 28.7 bits (61), Expect = 0.78
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 160 KMVYETVPRTVRILLLGEPGVGKTSLILSLVTEE 261
K E V + ++LLGE G GKT+ I + EE
Sbjct: 517 KQFLEAVSKNQILVLLGETGSGKTTQITQYLAEE 550
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 172 ETVPRTVRILLLGEPGVGKTSLILSLV 252
+ P V + ++G PG GK++LI SLV
Sbjct: 69 DEAPPPVIVAVMGPPGTGKSTLIKSLV 95
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 196 ILLLGEPGVGKTSLILSLVTEEF 264
+L G PG GKTS IL+L E F
Sbjct: 55 MLFYGSPGTGKTSTILALSRELF 77
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 251 TNDKISDVLPTPGSPRRSIRTVRGTV 174
TND+ D L TP S RR R+ R ++
Sbjct: 2413 TNDQEEDALATPSSSRRDSRSKRASL 2438
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 199 LLLGEPGVGKTSLILSLV 252
L+LG PG GKT+ I SL+
Sbjct: 952 LILGMPGTGKTTTISSLI 969
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 196 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEIT 300
+LL G PG GKT L ++ TE + A +T
Sbjct: 495 MLLFGPPGTGKTMLARAVATESRSVFFSISASSLT 529
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 175 TVPRTVRILLLGEPGVGKTSLILSLVTE 258
T+PR L++G G GK++L ++L+ E
Sbjct: 603 TIPRNQFTLVVGSTGSGKSTLAMALLGE 630
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 373 EQVAEEIERAHVIC-IVFSVDRQETLNKIATYWLPFVRDNCPEDY 504
++ AE ++ +C IV+S ETL KI W+ + N ED+
Sbjct: 132 KRFAECFDKNPDLCLIVYSKLEVETLAKITPIWINVAKKNKKEDF 176
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +1
Query: 532 KIDLIDYSVIDNIWDIAEEYPEVDRCIECSAKSLINVS 645
K+D + + +DNI ++E +P + I+ + + + NV+
Sbjct: 1069 KLDFVLKNELDNILPLSEVFPSLFHAIQATLEKVSNVN 1106
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 196 ILLLGEPGVGKTSLILSLVTE 258
+LL G PG GKT L ++ TE
Sbjct: 415 MLLFGPPGTGKTMLARAVATE 435
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +1
Query: 199 LLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVPTNIIDICIPEQS 369
L+ G PG GKT IL ++ T + + +P + N I IC P +
Sbjct: 1290 LIQGPPGTGKTKTILGMIGAVLTS--SSQGLQFNVPGQT--RKTSKNKILICAPSNA 1342
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 169 YET--VPRTVRILLLGEPGVGKTSLILSLVTE 258
Y+T +P LL G PG GKTS + +L E
Sbjct: 234 YDTRGIPYRRGYLLYGPPGSGKTSFLYALAGE 265
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 321 WRYISRYSYFFSFWRHMFCK 262
WR I ++ F+ RH FCK
Sbjct: 6 WRSILYIAFLFAITRHAFCK 25
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 496 EDYRKPVILVGNKIDLIDYSVIDN-IWDIAEEYPEV 600
E K +ILV NK+DL+ SV + +A+EYP +
Sbjct: 244 EASHKHMILVLNKVDLVPTSVAAAWVKILAKEYPTI 279
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 184 RTVRILLLGEPGVGKTSLILSLVTEEFTEHVP 279
R +RIL++G GKT+++ L E +P
Sbjct: 16 REMRILMVGLDAAGKTTILYKLKLGEIVTTIP 47
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 178 VPRTVRILLLGEPGVGKTSL 237
+P+ ILL G PG GKT L
Sbjct: 176 IPQPKGILLYGPPGTGKTLL 195
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.4 bits (53), Expect = 7.3
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +1
Query: 478 VRDNCPEDYRKPVILVGNKIDLIDYSVIDNIWDIAEEYPEVDRCIECSAKSLIN 639
VRD DYRK + LV + L +V +NI A + + IE K+ I+
Sbjct: 1185 VRDYNINDYRKQIALVSQEPTLYQGTVRENIVLGASKDVSEEEMIEACKKANIH 1238
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 184 RTVRILLLGEPGVGKTSLILS 246
R +L G PG GKTS IL+
Sbjct: 55 RVPHMLFYGPPGTGKTSTILA 75
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 7.3
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = -1
Query: 407 TCALSISSATCSKDCSGIQISIILVGTCSGVTSAGIVISSAFGGTCSVNSSVTNDKISDV 228
TC +S SS + S S I+ ++GT TS+ I+S+ S +SS ++ S
Sbjct: 113 TCTISTSSLSYSGTISSTSIAPSMIGT---RTSSSYFITSSSSTPSSSSSSSSSSPSSSS 169
Query: 227 LPTPGSPRRS 198
+ S + S
Sbjct: 170 SKSSSSSKSS 179
>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Frame = +1
Query: 157 YKMVYETVPRTVRILLLGEPGVGK-TSLILSLVTEEFTE---------HVPPKAEEITIP 306
YK+ + P +R++ + P + T ++ + T + E HVPP AEE I
Sbjct: 78 YKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYTTLYVEFVVKHPLYTHVPPSAEEGGIN 137
Query: 307 ADV 315
++
Sbjct: 138 CEI 140
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 196 ILLLGEPGVGKTSLILSLVTE 258
ILL G PG GK+ L ++ TE
Sbjct: 165 ILLYGPPGTGKSYLAKAVATE 185
>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
Cut8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 592 PEVDRCIECSAKSLINVSEMF 654
P +D C+E K LIN+++ F
Sbjct: 72 PSMDTCVETLRKLLINLNDSF 92
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 196 ILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEI 297
+L G PG GKT L ++ E + K E+
Sbjct: 534 VLFFGPPGTGKTLLAKAIANECSANFISVKGPEL 567
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +1
Query: 184 RTVRILLLGEPGVGKTSLILSLVTEEFTEHVPPKAEEITIPADVTPEQVPTNIIDI 351
+ +RIL+LG GKT+++ L + +P + VT + + N+ D+
Sbjct: 20 KEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNV---ETVTYKNIKFNVWDV 72
>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
pyridoxine, pyridoxal, and pyridoxamine
Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -2
Query: 463 RWLFYLKSLVYPLKILCILHVPFLSLQQLVLKIVQEYK 350
RWL+Y+ +V ++ IL +P + L +K++ Y+
Sbjct: 237 RWLYYINIIVGGFFLIVILIIP----ETLPIKVITRYE 270
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,462,567
Number of Sequences: 5004
Number of extensions: 49086
Number of successful extensions: 265
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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