Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_F18
(655 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127; Euka... 267 2e-70
UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes ... 259 4e-68
UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4; Eukary... 216 4e-55
UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5; Magnol... 201 1e-50
UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protei... 173 3e-42
UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia... 163 4e-39
UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n... 118 8e-39
UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of cy... 156 4e-37
UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative; n... 155 1e-36
UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7; T... 144 2e-33
UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1; Guilla... 135 1e-30
UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1; O... 124 2e-27
UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1; Enceph... 117 2e-25
UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2; Neoptera... 105 9e-22
UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum... 95 1e-18
UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45; root|... 95 2e-18
UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus ... 91 3e-17
UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1; Methan... 86 6e-16
UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum... 84 2e-15
UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1; Archae... 83 6e-15
UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4; Entamoeba|... 82 1e-14
UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11; Eurya... 80 4e-14
UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropy... 77 3e-13
UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5; Thermo... 77 5e-13
UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum ... 73 8e-12
UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiel... 72 1e-11
UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1; Nanoar... 72 1e-11
UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4; Haloba... 70 4e-11
UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3; Sulfol... 68 2e-10
UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6; Methan... 64 2e-09
UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 60 3e-08
UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured... 60 5e-08
UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;... 60 5e-08
UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 58 2e-07
UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1; Arabido... 53 7e-06
UniRef50_UPI0000EBD60B Cluster: PREDICTED: similar to ribosomal ... 50 4e-05
UniRef50_Q53K43 Cluster: Retrotransposon protein, putative, uncl... 48 2e-04
UniRef50_A4RYI1 Cluster: Plastid ribosomal protein L13 large rib... 47 3e-04
UniRef50_Q7V521 Cluster: 50S ribosomal protein L13; n=32; Bacter... 46 8e-04
UniRef50_Q3AW67 Cluster: 50S ribosomal protein L13; n=12; Bacter... 44 0.003
UniRef50_Q6G3I6 Cluster: 50S ribosomal protein L13; n=33; Bacter... 43 0.006
UniRef50_Q1AU63 Cluster: 50S ribosomal protein L13; n=3; Bacteri... 42 0.013
UniRef50_Q7XYN9 Cluster: Ribosomal protein rpL13; n=1; Bigelowie... 41 0.023
UniRef50_Q8DW98 Cluster: 50S ribosomal protein L13; n=42; Lactob... 41 0.030
UniRef50_Q2IA19 Cluster: Chloroplast 50S ribosomal protein L13; ... 40 0.052
UniRef50_Q9TLV3 Cluster: Putative uncharacterized protein rpl13;... 40 0.069
UniRef50_Q67JX6 Cluster: 50S ribosomal protein L13; n=59; Bacter... 40 0.069
UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1; Cyanidi... 38 0.16
UniRef50_Q1IU84 Cluster: 50S ribosomal protein L13; n=17; Bacter... 38 0.28
UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1; ... 37 0.49
UniRef50_Q12487 Cluster: 54S ribosomal protein L23, mitochondria... 36 0.64
UniRef50_Q82UK0 Cluster: 50S ribosomal protein L13; n=30; Bacter... 36 1.1
UniRef50_O46915 Cluster: Chloroplast 50S ribosomal protein L13; ... 36 1.1
UniRef50_Q7WFC3 Cluster: 50S ribosomal protein L13; n=265; Bacte... 35 2.0
UniRef50_Q9SYL9 Cluster: 50S ribosomal protein L13, chloroplast ... 35 2.0
UniRef50_Q855Z2 Cluster: Gp80; n=1; Mycobacterium phage Barnyard... 34 2.6
UniRef50_Q8KTT2 Cluster: 50S ribosomal protein L13; n=1; Candida... 34 3.4
UniRef50_Q9HKW8 Cluster: Transposase related protein; n=2; Therm... 34 3.4
UniRef50_A0PY48 Cluster: Sensor histidine kinase, putative; n=1;... 33 4.5
UniRef50_Q60TB9 Cluster: Putative uncharacterized protein CBG205... 33 7.9
UniRef50_Q9RXY1 Cluster: 50S ribosomal protein L13; n=6; Bacteri... 33 7.9
>UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127;
Eukaryota|Rep: 60S ribosomal protein L13A - Drosophila
melanogaster (Fruit fly)
Length = 205
Score = 267 bits (654), Expect = 2e-70
Identities = 117/203 (57%), Positives = 152/203 (74%)
Frame = +1
Query: 25 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFL 204
MTG +N+ +VIDGRGHLLGRLA+V+AK LL+G KV VVRCE++N+SG+F+ NK+K +++L
Sbjct: 1 MTGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYL 60
Query: 205 RKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXX 384
RKRCNVNPARGPFHFRAPS+I +K VRGMIPHKT+RG+ AL RLR +DG P P+D
Sbjct: 61 RKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRV 120
Query: 385 XXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRIT 564
L+ R YC VGRLSHE+GW Y+DV++ LE KRK K + + ++LK++T
Sbjct: 121 VVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLT 180
Query: 565 KDAGEKVSKATTPFTTIIQSYGY 633
A E ++KA PF II+SYGY
Sbjct: 181 VKARENIAKAAEPFNKIIKSYGY 203
>UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes
aegypti|Rep: 60S ribosomal protein L13a - Aedes aegypti
(Yellowfever mosquito)
Length = 236
Score = 259 bits (635), Expect = 4e-68
Identities = 116/203 (57%), Positives = 146/203 (71%)
Frame = +1
Query: 25 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFL 204
M G S K I+IDGRGHLLGRLA+VIAK +L G KVVVVRCE + +SG+FF NK+K +++L
Sbjct: 1 MPGLSEKPILIDGRGHLLGRLASVIAKQILNGRKVVVVRCEDLQLSGHFFRNKIKFLAYL 60
Query: 205 RKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXX 384
RKRCNVNPARGPFHFRAPS++LWK VRGM+PHKT+RG NAL+RL+ Y+G P PFD
Sbjct: 61 RKRCNVNPARGPFHFRAPSRMLWKAVRGMVPHKTKRGHNALKRLKVYEGIPSPFDRQKRL 120
Query: 385 XXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRIT 564
CL+P R +C VGR++HE+GWKYRDVV LE KRK K+ + KKLK++T
Sbjct: 121 CVPTAMRQLCLRPDRKFCDVGRVAHEVGWKYRDVVNNLEAKRKIKSRLSYLHSKKLKKLT 180
Query: 565 KDAGEKVSKATTPFTTIIQSYGY 633
A V+ +++ YGY
Sbjct: 181 WKARTAVADKVKDQDAVLRKYGY 203
>UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4;
Eukaryota|Rep: 60S ribosomal protein L13a - Cyanophora
paradoxa
Length = 200
Score = 216 bits (527), Expect = 4e-55
Identities = 99/197 (50%), Positives = 131/197 (66%)
Frame = +1
Query: 43 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNV 222
K +V+D RGHLLGRLAA +AK LL G +VV VR E+INISG+ F NKLK +FL+KR N
Sbjct: 4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNT 63
Query: 223 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 402
NP RGPFHFR+P++ILW+T+RGMIPHKT RG AL RL+ ++G PPP+D
Sbjct: 64 NPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQAL 123
Query: 403 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEK 582
LKPGR +C +GRL+ E+GW++ D+V +LE+KRK K+ A +K L + A
Sbjct: 124 RVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKAAVA 183
Query: 583 VSKATTPFTTIIQSYGY 633
V+ T + YG+
Sbjct: 184 VASKTANIQKELDHYGF 200
>UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5;
Magnoliophyta|Rep: 60S ribosomal protein L13a - Capsicum
annuum (Bell pepper)
Length = 220
Score = 201 bits (491), Expect = 1e-50
Identities = 92/184 (50%), Positives = 127/184 (69%)
Frame = +1
Query: 16 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLM 195
+V +G S + IV+D R H+LGRL++++AK LL G +VVVVRCE+I +SG K+K +
Sbjct: 1 MVSGSGISARRIVVDARHHMLGRLSSILAKELLNGQRVVVVRCEEICLSGGLVRQKMKYL 60
Query: 196 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 375
FLRKR N P+ GP HFRAPSKILW+T+RGMIPHKT+RG AL RL+ Y+G PPP+D
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRGAAALARLKVYEGVPPPYDKI 120
Query: 376 XXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLK 555
L+ G YC +G+LS E+GW + D +++LEDKRK +A +V YE++ K
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGKLSSEVGWNHYDTIKELEDKRKERA--QVTYERR-K 177
Query: 556 RITK 567
++ K
Sbjct: 178 QLAK 181
>UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protein;
n=16; Alveolata|Rep: Ribosomal protein L13 containing
protein - Tetrahymena thermophila SB210
Length = 270
Score = 173 bits (421), Expect = 3e-42
Identities = 84/198 (42%), Positives = 119/198 (60%)
Frame = +1
Query: 40 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCN 219
+K +VID +GHLLGRLA+ +AK LL G ++VVVR E INISG+ F N++K FL K N
Sbjct: 75 DKLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMN 134
Query: 220 VNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXX 399
NP RG HFRAPS+I W+ VRGM+PHKT +G AL RL+ ++G P P+D
Sbjct: 135 HNPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDA 194
Query: 400 XXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGE 579
L+ R C +G LS +GW + ++ KLE+KR+ +A + ++KK+K+ E
Sbjct: 195 LKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEEKRRARA--KTYHDKKVKQADARKKE 252
Query: 580 KVSKATTPFTTIIQSYGY 633
+ A + +GY
Sbjct: 253 LAAPALKAIKDKLAQFGY 270
>UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_608_8346_8939 - Giardia lamblia ATCC
50803
Length = 197
Score = 163 bits (395), Expect = 4e-39
Identities = 82/195 (42%), Positives = 117/195 (60%)
Frame = +1
Query: 49 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNVNP 228
IVID +GH+LGRL+A++AK LL G++V +VRCE+ ISG F K + + KR N N
Sbjct: 4 IVIDCKGHILGRLSAIVAKELLHGHEVALVRCEKAIISGAFRDVKAHYLKKMHKRTNFNH 63
Query: 229 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 408
RGPFHFRAP++I+ +T+RGMIP+KT RG +A+ RLR YDG PP
Sbjct: 64 LRGPFHFRAPAEIVRRTIRGMIPYKTVRGSDAMSRLRVYDGIPPCCARYKRVVCPSAMAY 123
Query: 409 FCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVS 588
CL+P R C VGR++HEIGW++ V + E +R + K + ++ + +A EK +
Sbjct: 124 LCLRPERRRCEVGRVAHEIGWQHAADVERYEKRRLEECDKWYQDKIQIDKKIAEAAEKDA 183
Query: 589 KATTPFTTIIQSYGY 633
+ + YGY
Sbjct: 184 ELQR-INAELAKYGY 197
>UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB39CE UniRef100
entry - Canis familiaris
Length = 172
Score = 118 bits (283), Expect(2) = 8e-39
Identities = 55/88 (62%), Positives = 69/88 (78%)
Frame = +1
Query: 43 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNV 222
+ +V+ GRGHLLG LAA +AK +L G KVVVV E INISGNF+ NKLK ++FL K+ N
Sbjct: 5 QVLVLSGRGHLLGCLAATVAKQVL-GCKVVVVHYEGINISGNFYRNKLKYLAFLCKQMNT 63
Query: 223 NPARGPFHFRAPSKILWKTVRGMIPHKT 306
NP+RGP+ F+APS+I W T RGM+PHKT
Sbjct: 64 NPSRGPYRFQAPSRIFWWTARGMLPHKT 91
Score = 65.7 bits (153), Expect(2) = 8e-39
Identities = 29/72 (40%), Positives = 46/72 (63%)
Frame = +1
Query: 415 LKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKA 594
LKP R + ++GRL+H++GWKY+ V LE+ RK KA +K+L R+ K A + V K
Sbjct: 98 LKPTRKFAYLGRLAHKVGWKYQAVTATLEENRKEKAKIHYWKKKQLMRLWKQAKKNVEKK 157
Query: 595 TTPFTTIIQSYG 630
T +T ++++G
Sbjct: 158 TDKYTEFLKTHG 169
>UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit; n=2;
Ostreococcus|Rep: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit -
Ostreococcus lucimarinus CCE9901
Length = 199
Score = 156 bits (379), Expect = 4e-37
Identities = 75/198 (37%), Positives = 111/198 (56%)
Frame = +1
Query: 40 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCN 219
+K IVID +GHL GRLA++++K LL+G VVVVR E I +SG ++ + KR N
Sbjct: 2 DKVIVIDAKGHLFGRLASIVSKQLLQGQHVVVVRTEGICMSGGMVRRRMAHDRYKNKRMN 61
Query: 220 VNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXX 399
NP +GP+H+ +PS++ WKTVRGM+PHKT RG A R + Y+G P P+D
Sbjct: 62 TNPKKGPYHYTSPSRLFWKTVRGMLPHKTVRGAAAFERFKAYEGIPAPYDKVKRAVVPEA 121
Query: 400 XXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGE 579
L G +C +G +IGWK+ +V++LE KR+ A + A +K+ A
Sbjct: 122 LKVLRLGEGHRFCVLGDFCEQIGWKHGAIVKELEAKRQTAASEYWAQKKEANSKFAAAKA 181
Query: 580 KVSKATTPFTTIIQSYGY 633
+ +I++ GY
Sbjct: 182 AANAQLGDLQQLIEATGY 199
>UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative;
n=10; Trypanosomatidae|Rep: 60S ribosomal protein L13a,
putative - Leishmania major
Length = 222
Score = 155 bits (375), Expect = 1e-36
Identities = 82/197 (41%), Positives = 110/197 (55%), Gaps = 2/197 (1%)
Frame = +1
Query: 49 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNVNP 228
IVID + H+LGR AAV+AK LL G K+ VVRCEQ+NI+G NK+K + +LRKR NP
Sbjct: 25 IVIDLKDHVLGRAAAVVAKQLLLGKKITVVRCEQLNIAGTEIRNKIKYLQYLRKRKLTNP 84
Query: 229 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXX-XXXX 405
+GPFH RAPS + +TVR M+P T+RG AL L Y+G PP
Sbjct: 85 TKGPFHHRAPSDVFVRTVRSMLPRYTKRGMKALNSLVAYEGIPPNVVRTGGRVVIPRAQR 144
Query: 406 XFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDA-GEK 582
C + R Y +G + +GWKY DVV LE R KA + + KL+ K A E
Sbjct: 145 HVCYRSERPYTVLGNMCKHVGWKYSDVVANLEKARVEKASRHHEKQAKLRDAWKSARKEA 204
Query: 583 VSKATTPFTTIIQSYGY 633
++K +++ +GY
Sbjct: 205 LAKMPKHNVEVLKKFGY 221
>UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7;
Trichomonas vaginalis G3|Rep: Ribosomal protein L13,
putative - Trichomonas vaginalis G3
Length = 200
Score = 144 bits (349), Expect = 2e-33
Identities = 77/181 (42%), Positives = 104/181 (57%)
Frame = +1
Query: 49 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNVNP 228
IVID +GH+ GRLAA +AK LL+G KVVVVRCE+I ++G FL K N NP
Sbjct: 5 IVIDAKGHIQGRLAAAVAKQLLKGRKVVVVRCEEIELNGQHKFTVHTYERFLNKTTNSNP 64
Query: 229 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 408
GPFH RAP +I + VRGMIP+KT RG +A L+ Y+G P + +
Sbjct: 65 RDGPFHQRAPHEIFARAVRGMIPYKTHRGADAFANLQCYEGIPAKYVSYKRLVIPHALRC 124
Query: 409 FCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVS 588
+ R +GRLS +GWKY +VV +LE++RK ++ K +K + A EKV+
Sbjct: 125 VSIHTDRPTTKLGRLSTTMGWKYGNVVAQLEEQRKAESAKYFEAKKAAQDKRAAAIEKVN 184
Query: 589 K 591
K
Sbjct: 185 K 185
>UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1;
Guillardia theta|Rep: 60s ribosomal protein L13A -
Guillardia theta (Cryptomonas phi)
Length = 194
Score = 135 bits (326), Expect = 1e-30
Identities = 66/175 (37%), Positives = 102/175 (58%), Gaps = 2/175 (1%)
Frame = +1
Query: 43 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNV 222
K V+D + HLLGR+A++ AK +L+G+K++++R E +I+G N K S +K+ N
Sbjct: 2 KIHVLDAKNHLLGRMASICAKKILQGDKIIIIRSELTSITGKLGRNVNKYKSIFKKKTNT 61
Query: 223 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 402
NP RGPFHF++PSKIL++T++ MIPHKT RG AL+ L+ ++G P F
Sbjct: 62 NPRRGPFHFKSPSKILYQTIKRMIPHKTMRGSKALKNLKIFEGLPRIFSKIKKEKFFEAF 121
Query: 403 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDK--RKGKAVKRVAYEKKLKRI 561
+K R ++G++ +GWK R + + D+ GK V + E K RI
Sbjct: 122 RYKVIKNYRKTVNLGKVCEVLGWKNRKFIEQKSDQLAALGKVVLKKKKEIKKFRI 176
>UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
ribosomal protein L13a - Oryza sativa subsp. japonica
(Rice)
Length = 172
Score = 124 bits (298), Expect = 2e-27
Identities = 65/159 (40%), Positives = 87/159 (54%)
Frame = +1
Query: 16 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLM 195
+V +G +V+D R H+L RLA++IAK LL G +VV
Sbjct: 1 MVSGSGVCAPRVVVDARHHMLSRLASIIAKELLNGKRVV--------------------- 39
Query: 196 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNX 375
R N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 40 -----RMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRT 94
Query: 376 XXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVR 492
L+PG YC +G+LS E+GW Y D +R
Sbjct: 95 KRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIR 133
>UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13A
- Encephalitozoon cuniculi
Length = 198
Score = 117 bits (282), Expect = 2e-25
Identities = 64/178 (35%), Positives = 95/178 (53%), Gaps = 4/178 (2%)
Frame = +1
Query: 49 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNVNP 228
++ID G + G+LAA +AK+LLEG +V VV E+ G+ K +L KRC VNP
Sbjct: 7 VIIDATGQVAGKLAAKVAKLLLEGVRVTVVCAEEAVFVGSLERAMDKFKQYLNKRCLVNP 66
Query: 229 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 408
RGPFHFR P L K +R MI +K RGK A+ RL TY+G P +
Sbjct: 67 RRGPFHFREPRMHLAKIIRRMISYKKPRGKAAMSRLATYEGIPRELEGQPRYKVTCAFVK 126
Query: 409 FCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGK----AVKRVAYEKKLKRITKD 570
+ P R Y +G+L GWK+ + + L D+ K + ++++ +KK++ + D
Sbjct: 127 YTGNPNR-YVTLGKLLSMFGWKHAEAAKSLTDELKERESLASLQKKDLDKKIEELKTD 183
>UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2;
Neoptera|Rep: Ribomsomal protein L13Ae - Cicindela
campestris (Green tiger beetle)
Length = 78
Score = 105 bits (252), Expect = 9e-22
Identities = 42/75 (56%), Positives = 55/75 (73%)
Frame = +1
Query: 412 CLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSK 591
CLKPGR YCHVGRLSHE+GWKY+ V+ LE KR+ K + +K+KR+TK A +K+ K
Sbjct: 4 CLKPGRKYCHVGRLSHEVGWKYQKVIESLEHKRQVKVAIKARKHRKMKRLTKKASKKIEK 63
Query: 592 ATTPFTTIIQSYGYN 636
P+T +I+SYGYN
Sbjct: 64 QVAPYTAVIKSYGYN 78
>UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L13 - Cenarchaeum
symbiosum
Length = 139
Score = 95.1 bits (226), Expect = 1e-18
Identities = 48/140 (34%), Positives = 72/140 (51%)
Frame = +1
Query: 52 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNVNPA 231
++D H+ GRLA+ +AK+LLEGN+V ++ CE++ ISG + FL+ ++P
Sbjct: 1 MVDATDHIAGRLASNVAKMLLEGNRVSIINCEKVMISGKRASIVREYRDFLKIASIIHPE 60
Query: 232 RGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXF 411
GP+H R P I+ + +RGM+P K GK A RLR Y G P +
Sbjct: 61 HGPYHPRRPDTIMTRMIRGMLPRKKPSGKAAHSRLRAYIGSPGHLKSFEKRKLKGAEIT- 119
Query: 412 CLKPGRNYCHVGRLSHEIGW 471
+P NY + L +GW
Sbjct: 120 --RPTANYTTMADLGETVGW 137
>UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45;
root|Rep: 50S ribosomal protein L13P - Pyrococcus
horikoshii
Length = 142
Score = 94.7 bits (225), Expect = 2e-18
Identities = 54/144 (37%), Positives = 82/144 (56%), Gaps = 2/144 (1%)
Frame = +1
Query: 52 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN--FFXNKLKLMSFLRKRCNVN 225
+I+ G +LGRLA+ +AK+LLEG +VV+V E+ I+GN +K K + LR N
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTL--TN 60
Query: 226 PARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXX 405
P RGPF+ + +I+ +T+RGM+P KT+RG+ A RRL+ Y G P F +
Sbjct: 61 PRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHV 120
Query: 406 XFCLKPGRNYCHVGRLSHEIGWKY 477
+P Y VG ++ +G K+
Sbjct: 121 SRLSRP--KYVTVGEVAKFLGGKF 142
>UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L13
- Candidatus Nitrosopumilus maritimus SCM1
Length = 154
Score = 90.6 bits (215), Expect = 3e-17
Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Frame = +1
Query: 37 SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRC 216
+++ IV+D H+ GRL++ +AK+L +G++V +V CE+I SG + FL
Sbjct: 10 TDRPIVVDATNHIAGRLSSNVAKLLKQGHRVSIVNCEKIMYSGTRSNLIKEYREFLEINS 69
Query: 217 NVNPARGPFHFRAPSKILWKTVRGMIPH-KTERGKNALRRLRTYDGCPPPFDNXXXXXXX 393
+NP GP H+R P I+ K +R M+P+ + GK +++RLR Y G P +
Sbjct: 70 IINPKHGPVHYRRPDTIITKMIRQMLPYDRKPSGKESIKRLRAYIGSPKELKSLEKIQFE 129
Query: 394 XXXXXFCLKPGRNYCHVGRLSHEIGW 471
K NY +G L IGW
Sbjct: 130 KAKIK---KSPSNYTTMGELCRVIGW 152
>UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1;
Methanopyrus kandleri|Rep: 50S ribosomal protein L13P -
Methanopyrus kandleri
Length = 159
Score = 86.2 bits (204), Expect = 6e-16
Identities = 50/141 (35%), Positives = 76/141 (53%)
Frame = +1
Query: 52 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNVNPA 231
VID +LGRLA+V+AK +L+G ++ V+ E+ I+G N +K +L+K +P
Sbjct: 17 VIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITGK--KNTIK-EEWLQKIQRGDPK 73
Query: 232 RGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXF 411
+GPF+ R P I + VRGM+P KT+RG+ A +RLR Y G P +
Sbjct: 74 KGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEANIEPERVAEADM 133
Query: 412 CLKPGRNYCHVGRLSHEIGWK 474
Y +G LS E+G++
Sbjct: 134 SRLGHLWYVTLGELSEELGYQ 154
>UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L13 - Thermofilum
pendens (strain Hrk 5)
Length = 154
Score = 84.2 bits (199), Expect = 2e-15
Identities = 49/118 (41%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = +1
Query: 25 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLK-LMSF 201
M+G +AIVIDG GH+ GRLA+V+AK LL+G++VVVV E+I I+G K L +
Sbjct: 1 MSG-KEEAIVIDGTGHIAGRLASVVAKRLLKGDRVVVVNAEKIVITGKPKRVVEKYLKRW 59
Query: 202 LRKRCNVNP-ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDN 372
+ + NP RGP + + P ++ + VRGM+P + G+++L+RL Y G P + N
Sbjct: 60 VEWKTYYNPELRGPKYPKTPDRLFKRMVRGMLPMEKTIGRDSLKRLTVYVGLPDEYRN 117
>UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L13P -
Archaeoglobus fulgidus
Length = 156
Score = 83.0 bits (196), Expect = 6e-15
Identities = 43/102 (42%), Positives = 64/102 (62%)
Frame = +1
Query: 52 VIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNVNPA 231
VID GH+LGRL++ IAK LL G ++VVV E+ I+G+ + + + K +
Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGDKY---MVFERYKEKYDRGSKE 74
Query: 232 RGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 357
+GP+ R P +I +TVRGM+P K+ RG++A RRLR + G P
Sbjct: 75 KGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVP 116
>UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4;
Entamoeba|Rep: Ribosomal protein L13A - Entamoeba dispar
Length = 87
Score = 82.2 bits (194), Expect = 1e-14
Identities = 37/80 (46%), Positives = 54/80 (67%)
Frame = +1
Query: 37 SNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRC 216
+NK VID GH+LGR+A+V+AK LL G K+V+VRCE + + G ++ + RKR
Sbjct: 8 NNKVTVIDCHGHVLGRVASVVAKHLLLGQKIVLVRCEDLQVCGTLKMRLVQWELYQRKRV 67
Query: 217 NVNPARGPFHFRAPSKILWK 276
N NP RG FH R+P++++ K
Sbjct: 68 NTNPTRGAFHHRSPAEMVRK 87
>UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11;
Euryarchaeota|Rep: 50S ribosomal protein L13P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 140
Score = 80.2 bits (189), Expect = 4e-14
Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Frame = +1
Query: 52 VIDGRGHLLGRLAAVIAKVLLEGN-KVVVVRCEQINISGNFFXNKLKLMSFLRKRCNVNP 228
VID +G +LGRLA+ +AK LL G+ KV ++ E+ ISG+ L + R
Sbjct: 3 VIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGS---RAATLREYRETRDRGAT 59
Query: 229 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 408
GP+ + P +IL +T+RGM+P+K RG++A+ RL+ Y G P++
Sbjct: 60 EFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGV--PYELKGAETTTIADAD 117
Query: 409 FCLKPGRNYCHVGRLSHEIGWKY 477
L Y +G +S ++G K+
Sbjct: 118 MRLLSSNKYVELGEVSQKMGSKF 140
>UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropyrum
pernix|Rep: 50S ribosomal protein L13P - Aeropyrum
pernix
Length = 155
Score = 77.4 bits (182), Expect = 3e-13
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 1/151 (0%)
Frame = +1
Query: 25 MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGN-FFXNKLKLMSF 201
+ G + IV+DG G ++GRLA+V+AK+LL G +V VV E+I +SG+ + +
Sbjct: 3 LAGGEAREIVVDGSGMIMGRLASVVAKLLLAGWRVNVVNAEKIVLSGDPRMVVESYRTTV 62
Query: 202 LRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXX 381
L + + + P R P ++ VRGM+P RG+ AL RLR Y G P D
Sbjct: 63 LGVKSHFSHKWRPKRPRTPQRLFKHAVRGMLPKNKARGRRALARLRVYVGVP---DELKG 119
Query: 382 XXXXXXXXXFCLKPGRNYCHVGRLSHEIGWK 474
+ +Y +G ++ ++GWK
Sbjct: 120 REFVRFPEADASRLSSHYIELGAVARQLGWK 150
>UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L13P -
Pyrobaculum aerophilum
Length = 187
Score = 76.6 bits (180), Expect = 5e-13
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 7/110 (6%)
Frame = +1
Query: 49 IVIDGRGHLLGRLAAVIAKVLLE--GNKVVVVRCEQINISGNFFXNKLKLMSFLRK---- 210
+++D GH+ GRLA IAK LLE ++VVV E++ I+G+ K+ + F RK
Sbjct: 19 VIVDAEGHVAGRLATYIAKALLERPNLRIVVVNAEKLVITGD---EKMVIEWFKRKISEW 75
Query: 211 RCNVNPAR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 357
R + NP + GP R P ++ + VRGM+P K+E G++AL+RLR Y P
Sbjct: 76 RTHYNPEKAGPKVPRRPDRVFKRIVRGMLPKKSETGRSALKRLRVYMSIP 125
>UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L13 -
Halorubrum lacusprofundi ATCC 49239
Length = 149
Score = 72.5 bits (170), Expect = 8e-12
Identities = 36/103 (34%), Positives = 60/103 (58%)
Frame = +1
Query: 49 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNVNP 228
+V+D R +LGR+++ +A+ +L+G V VV E+ I+GN + M R +
Sbjct: 10 VVVDARDCILGRVSSKVAQRVLDGETVAVVNAERAVITGN----EEATMETYHTRAELGS 65
Query: 229 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 357
GP++ + P +I + +RGM+P+KTE G+ AL +R Y G P
Sbjct: 66 DSGPYYPKRPDRIFKRAIRGMLPYKTEDGREALSNVRVYVGNP 108
>UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L13A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 181
Score = 72.1 bits (169), Expect = 1e-11
Identities = 43/173 (24%), Positives = 77/173 (44%)
Frame = +1
Query: 43 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNV 222
K IVIDGR L+GRLA+ I +L +G + V+RC+ + SG + +++ +
Sbjct: 3 KTIVIDGRNQLIGRLASNIVILLKKGYTLKVIRCKDLVFSGRYEHVYNRILKKKNLKTRT 62
Query: 223 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 402
NP +GP+ F PS +L K V+GM+ + + + ++ P +
Sbjct: 63 NPNKGPYFFSNPSSLLKKIVKGMLNKLNKSHTLLFKSVECFNDTPNRYIYNYKLFLKNSH 122
Query: 403 XXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRI 561
+ LKP + + + + GW+ R + K ++ KKL +
Sbjct: 123 KNYKLKPDSKFTKLYEILPKFGWQDRSSCTESNSKNGIRSTIYSFNSKKLNNL 175
>UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L13P -
Nanoarchaeum equitans
Length = 162
Score = 71.7 bits (168), Expect = 1e-11
Identities = 37/103 (35%), Positives = 63/103 (61%)
Frame = +1
Query: 49 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNVNP 228
++ D G +LGRLA+++A+ L G +V +V E+ I+G+ N +K +L+K +
Sbjct: 7 LIYDAEGLVLGRLASIVARNLKRGYRVKIVNAEKAIITGD--PNMVK-KEWLQKVKRGDY 63
Query: 229 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 357
+GPF+ + P IL + +RGM+P KT RG+ L+ ++ Y G P
Sbjct: 64 YKGPFYPKRPDNILKRVIRGMLPRKTARGRELLKNVKVYIGVP 106
>UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4;
Halobacteriaceae|Rep: 50S ribosomal protein L13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 145
Score = 70.1 bits (164), Expect = 4e-11
Identities = 34/103 (33%), Positives = 60/103 (58%)
Frame = +1
Query: 49 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNVNP 228
+++D R ++GR+A+ +A+ L+G V VV E+ I+G + +++ KR ++
Sbjct: 10 VIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGR----EEQIVEKYEKRVDIGN 65
Query: 229 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 357
G F+ + P I +T+RGM+PHK +RG+ A +R Y G P
Sbjct: 66 DNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNP 108
>UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3;
Sulfolobaceae|Rep: 50S ribosomal protein L13P -
Sulfolobus solfataricus
Length = 149
Score = 68.1 bits (159), Expect = 2e-10
Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 3/151 (1%)
Frame = +1
Query: 28 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISG--NFFXNKLKLMSF 201
T + ++I+ G +LGR+A+ + ++L EG KV++V E+ ISG N KL+
Sbjct: 3 TQVQEQVVIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLL-- 60
Query: 202 LRKRCNVNPAR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXX 378
L + NP R G R+P I+ +T+RGM+P K+ +G+ L+ ++ Y G P F+
Sbjct: 61 LTVKTLFNPYRNGIRRPRSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFEGRQ 119
Query: 379 XXXXXXXXXXFCLKPGRNYCHVGRLSHEIGW 471
LK G+ Y V +S E+GW
Sbjct: 120 FIKFPDSDVS-RLK-GK-YVTVEVVSKELGW 147
>UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6;
Methanococcales|Rep: 50S ribosomal protein L13P -
Methanococcus maripaludis
Length = 137
Score = 64.5 bits (150), Expect = 2e-09
Identities = 32/104 (30%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = +1
Query: 49 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNVNP 228
+V++ ++GRLA+ +AK+ L G ++ VV E+ ++GN K + ++ NP
Sbjct: 2 VVVNAENAVVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISNP 61
Query: 229 AR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 357
+ GP + R P I+ + +RGM+P+K RG A ++++ G P
Sbjct: 62 KKMGPKYPRRPDDIVRRVIRGMLPYKKPRGVEAFKKIKIEVGVP 105
>UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L13P -
Picrophilus torridus
Length = 138
Score = 60.5 bits (140), Expect = 3e-08
Identities = 31/108 (28%), Positives = 54/108 (50%)
Frame = +1
Query: 49 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNVNP 228
I ID H+ GRL++ +AK LL G + +V ++ I+G + + F R +
Sbjct: 2 IYIDASNHIYGRLSSYVAKKLLNGESITIVNASKVVITGR---KEFIIDKFNNLRNTGSI 58
Query: 229 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDN 372
+GP++ + +IL +++ M+P K G AL+R Y P +N
Sbjct: 59 RKGPYYPKTADRILKRSIGDMLPKKKTHGMEALKRCMVYANVPKSLEN 106
>UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured
organism HF70_19B12|Rep: Ribosomal protein L13P -
uncultured organism HF70_19B12
Length = 161
Score = 60.1 bits (139), Expect = 5e-08
Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 8/111 (7%)
Frame = +1
Query: 49 IVIDGRGHLLGRLAAVIAKVLL----EGN--KVVVVRCEQINISGNFFXNKLKLMSFLRK 210
+V D +LGRLA+ IAK LL EG+ +V+++ E ++G K ++++ +
Sbjct: 7 LVFDAHDKVLGRLASHIAKTLLVTRREGDPKRVIIINAEMAIVTGP----KDRILADYDR 62
Query: 211 RCNVN-PARGPFHFRAPSKILWKTVRGMIPH-KTERGKNALRRLRTYDGCP 357
+ +N P +GPF R P IL +TVRGM+P+ K G+ A++ LR G P
Sbjct: 63 KYKLNHPRKGPFFPRMPDMILKRTVRGMLPYQKKSSGRQAVKDLRVMIGTP 113
>UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;
n=1; Pisum sativum|Rep: Putative senescence-associated
protein - Pisum sativum (Garden pea)
Length = 255
Score = 60.1 bits (139), Expect = 5e-08
Identities = 28/59 (47%), Positives = 38/59 (64%)
Frame = +1
Query: 73 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNVNPARGPFHF 249
+LGRLA+++AK L + +VRCE+I ISG K+K M FLR+R N P+ GP F
Sbjct: 1 MLGRLASIVAKELSMVRRSFLVRCEEICISGGLGRQKMKYMRFLRRRMNTKPSHGPITF 59
>UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4;
Thermoprotei|Rep: 50S ribosomal protein L13P -
Sulfolobus acidocaldarius
Length = 148
Score = 58.0 bits (134), Expect = 2e-07
Identities = 41/105 (39%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Frame = +1
Query: 49 IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFL-RKRCNVN 225
+++D +LGR++ IAK+L G KV VV E+ ISG L+ S L + N
Sbjct: 8 VIVDATNQILGRMSTHIAKLLKSGKKVYVVNAEKAIISGP-RSRVLEGYSLLFTVKTMQN 66
Query: 226 PAR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 357
P R G R P I+ +TVRGM+P K + GK R L+ Y G P
Sbjct: 67 PYRQGIRRPRNPINIVKRTVRGMLP-KNKLGKQIYRNLKAYIGIP 110
>UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1;
Arabidopsis thaliana|Rep: 60S L13 ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 61
Score = 52.8 bits (121), Expect = 7e-06
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +1
Query: 454 SHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQSYGY 633
+HE+GW+Y+ +V KLE+KRK K +K ++ + A EK T + +++ YGY
Sbjct: 1 AHEVGWQYQGIVEKLEEKRKVKGTAYYTKKKAEMKLKRQAIEKAKAKTAVYDKVLEQYGY 60
>UniRef50_UPI0000EBD60B Cluster: PREDICTED: similar to ribosomal
protein L13a; n=2; Bos taurus|Rep: PREDICTED: similar to
ribosomal protein L13a - Bos taurus
Length = 112
Score = 50.4 bits (115), Expect = 4e-05
Identities = 28/106 (26%), Positives = 45/106 (42%)
Frame = +1
Query: 193 MSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDN 372
+ + + NP+ GPF F P I TV+ ++P+K + + L L+ +D +
Sbjct: 6 LDLFHRPLDTNPSNGPFQFWVPKHIFRHTVQDLLPYKIKHDQETLEHLKVFDKTKQMIIS 65
Query: 373 XXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKR 510
CL G L++E GWKY+ V LE K+
Sbjct: 66 VQICVSEATSRFACL---------GYLTYESGWKYQVVTNTLEKKK 102
>UniRef50_Q53K43 Cluster: Retrotransposon protein, putative,
unclassified; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Retrotransposon protein, putative,
unclassified - Oryza sativa subsp. japonica (Rice)
Length = 512
Score = 48.0 bits (109), Expect = 2e-04
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +1
Query: 310 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHE 462
RG+ AL RL+ Y+G PPP+D L+PG YC +G+LS E
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKE 59
>UniRef50_A4RYI1 Cluster: Plastid ribosomal protein L13 large
ribosomal subunit; n=2; Ostreococcus|Rep: Plastid
ribosomal protein L13 large ribosomal subunit -
Ostreococcus lucimarinus CCE9901
Length = 218
Score = 47.2 bits (107), Expect = 3e-04
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Frame = +1
Query: 49 IVIDGRGHLLGRLAAVIAKVLLEGN------------KVVVVRCEQINISGNFFXNKLKL 192
+VID G LGRL+ V A L GN VVV+ ++I ++GN KL
Sbjct: 75 VVIDAAGLRLGRLSTVAATYLRGGNSGCYTPAFNMGVNVVVINADKIVVTGNKANQKLYY 134
Query: 193 MSFLRKR--CNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 363
+R + H R P++++ K ++GM+P K G+ L+ Y G P
Sbjct: 135 TLGVRGKPGSMKEETYASLHARQPARVIEKAIKGMLP-KNRMGRETFTHLKVYAGADHP 192
>UniRef50_Q7V521 Cluster: 50S ribosomal protein L13; n=32;
Bacteria|Rep: 50S ribosomal protein L13 -
Prochlorococcus marinus (strain MIT 9313)
Length = 150
Score = 46.0 bits (104), Expect = 8e-04
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Frame = +1
Query: 52 VIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFXNKLKLM 195
++D LGRLA +A VL NK VVVV ++I +SGN KL
Sbjct: 18 LVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQKLYRR 77
Query: 196 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 363
R R P +I+ K ++GM+PH G+ R+L+ Y G P
Sbjct: 78 HSGRPGGMKVETFQALQDRLPERIVEKAIKGMLPHNA-LGRQLFRKLKVYRGPEHP 132
>UniRef50_Q3AW67 Cluster: 50S ribosomal protein L13; n=12;
Bacteria|Rep: 50S ribosomal protein L13 - Synechococcus
sp. (strain CC9902)
Length = 150
Score = 44.0 bits (99), Expect = 0.003
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Frame = +1
Query: 52 VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFXNKLKLM 195
V+D LGRLA +A +L G+ VVVV E+I +SG KL
Sbjct: 18 VVDAENQTLGRLATEVASILRGKNNPNFTPHLDTGDFVVVVNAEKIQVSGKKPQQKLYRR 77
Query: 196 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 363
R R P +I+ K ++GM+PH G+ R+L+ Y G P
Sbjct: 78 HSGRPGGMKVETFESLQERIPERIVEKAIKGMLPHNA-LGRQMYRKLKVYKGTEHP 132
>UniRef50_Q6G3I6 Cluster: 50S ribosomal protein L13; n=33;
Bacteria|Rep: 50S ribosomal protein L13 - Bartonella
henselae (Rochalimaea henselae)
Length = 154
Score = 43.2 bits (97), Expect = 0.006
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Frame = +1
Query: 7 SXFVVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQ 150
+ F K T K ++ID +LGRLAA +A L +G+ V+V+ ++
Sbjct: 2 ATFSQKPTEVVKKWVIIDAENLVLGRLAAFVANRLRGKHKATFTPHVDDGDNVIVINADK 61
Query: 151 INISGNFFXNK-----LKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERG 315
I+++G + +K + ++KR AR R P +++ K V MIP + G
Sbjct: 62 ISLTGKKYTDKKYYWHTGYIGGIKKR----TARQILEGRFPERVVEKAVERMIP-RGPLG 116
Query: 316 KNALRRLRTYDGCPPP 363
+ L+ LR Y G P
Sbjct: 117 RRQLKNLRVYAGSQHP 132
>UniRef50_Q1AU63 Cluster: 50S ribosomal protein L13; n=3;
Bacteria|Rep: 50S ribosomal protein L13 - Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 143
Score = 41.9 bits (94), Expect = 0.013
Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Frame = +1
Query: 43 KAIVIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFXNKL 186
K VID G LGRLAA I+++L NK VVVV +++ ++G K+
Sbjct: 14 KWYVIDAEGKTLGRLAAEISRLLRGKNKPQYTPHVDVGDFVVVVNADKVEVTGRKAEQKV 73
Query: 187 -----KLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDG 351
LR+R R + P +IL + VRGM+P KT + L++LR Y G
Sbjct: 74 YRWHTGYPGGLRERSYRQMLR-----KRPEEILRQAVRGMMP-KTRLARRQLKKLRIYAG 127
Query: 352 CPPP 363
P
Sbjct: 128 PEHP 131
>UniRef50_Q7XYN9 Cluster: Ribosomal protein rpL13; n=1; Bigelowiella
natans|Rep: Ribosomal protein rpL13 - Bigelowiella
natans (Pedinomonas minutissima) (Chlorarachnion
sp.(strain CCMP 621))
Length = 273
Score = 41.1 bits (92), Expect = 0.023
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Frame = +1
Query: 49 IVIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFXNKL-K 189
IV+D + +LGRLA++ A +++ G VV++ +++ ++G + +KL K
Sbjct: 127 IVLDAQDQILGRLASLAATLVMGKWHPLYHPAMNMGAHVVIINADKVRVTGRKYTDKLYK 186
Query: 190 LMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 363
R + A R P +I+ ++GM+P KT G+ ++L Y G P
Sbjct: 187 RHVTGRPGSMKSEAFRDLQARIPERIVEVAIKGMLP-KTRLGREQFKQLHIYAGDENP 243
>UniRef50_Q8DW98 Cluster: 50S ribosomal protein L13; n=42;
Lactobacillales|Rep: 50S ribosomal protein L13 -
Streptococcus mutans
Length = 148
Score = 40.7 bits (91), Expect = 0.030
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Frame = +1
Query: 7 SXFVVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQ 150
+ ++ K K ++D LGRL+AV+A VL NK V+V+ E+
Sbjct: 4 TTYMAKPGEVERKWYIVDATDVPLGRLSAVVASVLRGKNKPTFTPHTDTGDFVIVINAEK 63
Query: 151 INISGNFFXNKLKLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALR 330
+ ++G NK+ + + G + +++ K+V+GM+PH T G+
Sbjct: 64 VKLTGKKAANKIYYTHSMYPGGLKQISAGELRSKNAVRLIEKSVKGMLPHNT-LGRAQGM 122
Query: 331 RLRTYDG 351
+L+ + G
Sbjct: 123 KLKVFVG 129
>UniRef50_Q2IA19 Cluster: Chloroplast 50S ribosomal protein L13;
n=1; Pavlova lutheri|Rep: Chloroplast 50S ribosomal
protein L13 - Pavlova lutherii (Monochrysis lutheri)
Length = 225
Score = 39.9 bits (89), Expect = 0.052
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Frame = +1
Query: 52 VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFXNKLKLM 195
VID G LGR+A IAK L+ G+ V+V+ +++ ISG F K
Sbjct: 73 VIDAEGMRLGRMATEIAKRLMGKHKVTFFPGSNMGDYVIVINADKVVISGAKFYQKEYFR 132
Query: 196 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDG 351
R + R P +I+ K V+GM+P K G+ R L+ + G
Sbjct: 133 HSGRPGGVTVESFEQLQARIPERIVEKAVKGMLP-KGPLGREQFRHLKVFAG 183
>UniRef50_Q9TLV3 Cluster: Putative uncharacterized protein rpl13;
n=1; Cyanidium caldarium|Rep: Putative uncharacterized
protein rpl13 - Cyanidium caldarium
Length = 143
Score = 39.5 bits (88), Expect = 0.069
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Frame = +1
Query: 73 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNVNPARGPFHF- 249
L+G+ + + + N V+++ Q+ I+GN N K+ + +H
Sbjct: 37 LMGKNRSTYSYNSMSANFVIIINSRQVAITGN--KNTQKVYKRYSAKPGATKTESFYHLK 94
Query: 250 -RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 363
R P++IL + V+GM+P K+ GK L+ Y G P
Sbjct: 95 KRIPNRILEQAVKGMLP-KSVLGKKMFSHLKVYAGDSHP 132
>UniRef50_Q67JX6 Cluster: 50S ribosomal protein L13; n=59;
Bacteria|Rep: 50S ribosomal protein L13 -
Symbiobacterium thermophilum
Length = 143
Score = 39.5 bits (88), Expect = 0.069
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Frame = +1
Query: 43 KAIVIDGRGHLLGRLAAVIAKVLLE------------GNKVVVVRCEQINISGNFFXNKL 186
K V+D G LGRLA+ +A +L G+ V++V E+I ++G +K+
Sbjct: 15 KWYVVDAEGKTLGRLASKVAAILRGKHKPTFTPHVDCGDFVIIVNAEKIQVTGKKVTDKV 74
Query: 187 KLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 363
R P ++L ++GM+PH G+ R+L+ Y G P
Sbjct: 75 YYRHSGYPGGQKATTFEQMIARRPERVLELAIKGMLPH-NRLGRQMYRKLKVYAGPEHP 132
>UniRef50_Q85FU2 Cluster: 50S ribosomal protein L13; n=1;
Cyanidioschyzon merolae|Rep: 50S ribosomal protein L13 -
Cyanidioschyzon merolae (Red alga)
Length = 98
Score = 38.3 bits (85), Expect = 0.16
Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Frame = +1
Query: 49 IVIDGRGHLLGRLAAVIAKVLLEGNK--VVVVRCEQINISGNFFXNKLKLMSFLRKRCNV 222
++I+ + +LGRLA+ + K LL + + +V+ QI ++GN + NK S+ R
Sbjct: 1 MLINAKDEILGRLASRVVKTLLTQSVTCIEIVQANQIQVTGNKYKNK----SYRRHSGRP 56
Query: 223 NPARGPFHFRAPSK-ILWKTVRGMIPHKTERGKNALRRLR 339
+ + ++ K L ++GM+P K +G+ R++R
Sbjct: 57 GGMKIRYFYQIGGKRALEHAIKGMLP-KGVKGRQLWRKIR 95
>UniRef50_Q1IU84 Cluster: 50S ribosomal protein L13; n=17;
Bacteria|Rep: 50S ribosomal protein L13 - Acidobacteria
bacterium (strain Ellin345)
Length = 142
Score = 37.5 bits (83), Expect = 0.28
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Frame = +1
Query: 37 SNKAIVIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFXN 180
+ K V+D G LGRLA+ +A++L G+ VVV+ E+I I+G N
Sbjct: 11 ARKWFVVDADGQTLGRLASRVARILSGKDNPKYTPFIDTGDHVVVINAEKIKITGLKADN 70
Query: 181 KLKLMSFLRKRCNVNPARGPFHF-RAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCP 357
K K + + R P IL ++GM+P K++ GK +L+ Y G
Sbjct: 71 K-KYYHYSGYPGGMKEEEFLKRLERRPELILETAIKGMLP-KSKLGKAMGGKLKVYRGAD 128
Query: 358 PP 363
P
Sbjct: 129 HP 130
>UniRef50_A5Z5I7 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 106
Score = 36.7 bits (81), Expect = 0.49
Identities = 24/75 (32%), Positives = 36/75 (48%)
Frame = -3
Query: 332 LLRAFLPRSVLCGIIPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLFXKKLPEIL 153
+LR F R+ L FHR L+W+ R+G + + + +S S F KK+P
Sbjct: 1 MLRYFSQRNSLAACSSSGCFHR-----LEWRACRSGESPYKFQSLSVSRSKFIKKVPSGR 55
Query: 152 ICSQRTTTTLFPSRR 108
+ SQ T+ P RR
Sbjct: 56 VISQSTSAFWLPFRR 70
>UniRef50_Q12487 Cluster: 54S ribosomal protein L23, mitochondrial
precursor; n=12; Saccharomycetales|Rep: 54S ribosomal
protein L23, mitochondrial precursor - Saccharomyces
cerevisiae (Baker's yeast)
Length = 163
Score = 36.3 bits (80), Expect = 0.64
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +1
Query: 118 GNKVVVVRCEQINISGNFFXNKLKLMSFLRK-RCNVNPARGPFHFRAPSKILWKTVRGMI 294
G+ VVV C++I ++G F K R + + + +IL K V GM+
Sbjct: 54 GDYVVVTNCQKIRVTGKKFEQKTYWSHSGRPGQLKLQTMNKVVADKGFGEILKKAVSGML 113
Query: 295 PHKTERGKNALRRLRTYDGCPPPF 366
P K + K L RL+ +DG P+
Sbjct: 114 P-KNKLRKQRLDRLKVFDGSENPY 136
>UniRef50_Q82UK0 Cluster: 50S ribosomal protein L13; n=30;
Bacteria|Rep: 50S ribosomal protein L13 - Nitrosomonas
europaea
Length = 144
Score = 35.5 bits (78), Expect = 1.1
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Frame = +1
Query: 52 VIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFXNKLKLM 195
V+D +LGRLAA IA L G+ +VV+ +++ ++GN +K
Sbjct: 17 VVDATDKVLGRLAAAIAHRLRGKHKPIYTPHVDTGDYIVVINADKLRVTGNKAEDKKYYR 76
Query: 196 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 363
H R P++ L K V+GM+P K G +++L+ Y G P
Sbjct: 77 HSGYPGGIYETTFKKMHERFPTRPLEKAVKGMLP-KGPLGYAMIKKLKIYAGDTHP 131
>UniRef50_O46915 Cluster: Chloroplast 50S ribosomal protein L13;
n=4; Eukaryota|Rep: Chloroplast 50S ribosomal protein
L13 - Guillardia theta (Cryptomonas phi)
Length = 143
Score = 35.5 bits (78), Expect = 1.1
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 12/121 (9%)
Frame = +1
Query: 43 KAIVIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQINISGNFFXNKL 186
K +ID LGRLA+ AK L+ N +V++ ++I ++GN +K
Sbjct: 15 KWFIIDATDKNLGRLASETAKTLVGKYDPLYAPNVNPKNIIVIINADKIRVTGNKKFDKF 74
Query: 187 KLMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPF 366
+ R P +IL K V+G++P K G+ L+ Y G P
Sbjct: 75 YYRHSGQVGGLTIETFNELQSRLPGRILEKAVKGILP-KGPLGRELFNNLKVYAGSSHPH 133
Query: 367 D 369
+
Sbjct: 134 E 134
>UniRef50_Q7WFC3 Cluster: 50S ribosomal protein L13; n=265;
Bacteria|Rep: 50S ribosomal protein L13 - Bordetella
bronchiseptica (Alcaligenes bronchisepticus)
Length = 142
Score = 34.7 bits (76), Expect = 2.0
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 13/130 (10%)
Frame = +1
Query: 13 FVVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLL------------EGNKVVVVRCEQIN 156
FV K VID +G +LGR+A+ +A L G+ +V++ I
Sbjct: 4 FVAKPHEVKRDWFVIDAKGKVLGRVASEVAHRLRGKHKPEFTPHVDTGDYIVIINAADIV 63
Query: 157 ISGNFFXNKLKLMSFLRKRCNVNPAR-GPFHFRAPSKILWKTVRGMIPHKTERGKNALRR 333
++GN +K K + R P + + K V+GM+P K G +++
Sbjct: 64 VTGNKAQDK-KYFRHTTYPGGIRETNFEKMQQRFPGRAIQKAVKGMLP-KGPLGYAMIKK 121
Query: 334 LRTYDGCPPP 363
L+ Y G P
Sbjct: 122 LKVYAGAEHP 131
>UniRef50_Q9SYL9 Cluster: 50S ribosomal protein L13, chloroplast
precursor; n=47; cellular organisms|Rep: 50S ribosomal
protein L13, chloroplast precursor - Arabidopsis
thaliana (Mouse-ear cress)
Length = 241
Score = 34.7 bits (76), Expect = 2.0
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Frame = +1
Query: 52 VIDGRGHLLGRLAAVIA-----KVLLE-------GNKVVVVRCEQINISGNFFXNKLKLM 195
V+D +LGRLA+ IA K L G V+VV E++ +SG KL
Sbjct: 107 VVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRR 166
Query: 196 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 369
R R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 167 HSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLP-KGRLGRALFNHLKVYKGPDHPHE 223
>UniRef50_Q855Z2 Cluster: Gp80; n=1; Mycobacterium phage
Barnyard|Rep: Gp80 - Mycobacterium phage Barnyard
Length = 1111
Score = 34.3 bits (75), Expect = 2.6
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Frame = +1
Query: 418 KPGRNYCHVG-----RLSHEI--GWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRIT-KDA 573
KP R C G +LS EI GWKYR R +RK + VKR+ YE K+ IT KD
Sbjct: 296 KPLRFVCDKGLTAKQQLSREIAKGWKYRVAQRPDMARRKAEYVKRLQYEFKI--ITDKDF 353
Query: 574 GE 579
G+
Sbjct: 354 GD 355
>UniRef50_Q8KTT2 Cluster: 50S ribosomal protein L13; n=1; Candidatus
Tremblaya princeps|Rep: 50S ribosomal protein L13 -
Tremblaya princeps
Length = 124
Score = 33.9 bits (74), Expect = 3.4
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Frame = +1
Query: 52 VIDGRGHLLGRLAAVIAKVL------------LEGNKVVVVRCEQINISGNFFXNKLKLM 195
V+D RG +LGRLA +A +L N V V+ CE + ISG+ K+
Sbjct: 8 VLDARGMVLGRLAVTVAGLLRGKYKASYAHNAAPHNAVTVLNCEHVRISGSKAVGKVYYR 67
Query: 196 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGK 318
R+P+ +L V GM+P R +
Sbjct: 68 HSGHPGGLRRTKLHDLMLRSPATVLRAAVHGMLPRNRLRDR 108
>UniRef50_Q9HKW8 Cluster: Transposase related protein; n=2;
Thermoplasmatales|Rep: Transposase related protein -
Thermoplasma acidophilum
Length = 350
Score = 33.9 bits (74), Expect = 3.4
Identities = 17/50 (34%), Positives = 31/50 (62%)
Frame = +1
Query: 442 VGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSK 591
+G+ + I KY+ + +KL+ K+K K +K++ + + RI +D KVSK
Sbjct: 157 LGKKAEHIHNKYKAIRKKLQKKKKYKLLKKI--KDRESRIVRDLNHKVSK 204
>UniRef50_A0PY48 Cluster: Sensor histidine kinase, putative; n=1;
Clostridium novyi NT|Rep: Sensor histidine kinase,
putative - Clostridium novyi (strain NT)
Length = 405
Score = 33.5 bits (73), Expect = 4.5
Identities = 20/83 (24%), Positives = 43/83 (51%)
Frame = +1
Query: 73 LLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFXNKLKLMSFLRKRCNVNPARGPFHFR 252
++ +LA++I L NK++ ++ E++N ++ K+ R + N+N ++ +
Sbjct: 240 VVNKLASIIRDTLENANKIITLK-EEVNCILSYL-ELCKIKFGDRLKFNINIEEKYYNIK 297
Query: 253 APSKILWKTVRGMIPHKTERGKN 321
PS I++ V I H +R K+
Sbjct: 298 IPSMIIYTFVENAINHGIKRKKD 320
>UniRef50_Q60TB9 Cluster: Putative uncharacterized protein CBG20539;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG20539 - Caenorhabditis
briggsae
Length = 668
Score = 32.7 bits (71), Expect = 7.9
Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Frame = -1
Query: 505 CLQAYEQHHGISIQFHGT-VCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHM--YV 335
CL Y HHG Q HGT HD + H E GTHH Y
Sbjct: 450 CLAYYGTHHGTHDQSHGTHGGYHDPAHHGTHHATHYESHGTHGGYHDPAHHGTHHATHYE 509
Query: 334 AS*EHSCHALFCVGSY 287
+ H H+L G++
Sbjct: 510 SHGTHGHHSLAYYGTH 525
>UniRef50_Q9RXY1 Cluster: 50S ribosomal protein L13; n=6;
Bacteria|Rep: 50S ribosomal protein L13 - Deinococcus
radiodurans
Length = 174
Score = 32.7 bits (71), Expect = 7.9
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Frame = +1
Query: 49 IVIDGRGHLLGRLAAVIAK------------VLLEGNKVVVVRCEQINISGNFFXNKL-K 189
+V+D G LGRLA +IA +++G+ VVV+ Q+ ++G +K+
Sbjct: 42 VVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYT 101
Query: 190 LMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDG 351
+ + AR + P +++ V GM+P K +G+ RL+ Y G
Sbjct: 102 RYTGYQGGLKTETAREALS-KHPERVIEHAVFGMLP-KGRQGRAMHTRLKVYAG 153
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,752,335
Number of Sequences: 1657284
Number of extensions: 13240961
Number of successful extensions: 36515
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 35293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36467
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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