Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_F16
(544 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117; Eukar... 258 6e-68
UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27; Euka... 216 2e-55
UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=... 184 1e-45
UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal ... 160 2e-38
UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillar... 153 3e-36
UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17; ... 141 1e-32
UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7; A... 121 1e-26
UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19; ... 119 4e-26
UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1; Encepha... 118 9e-26
UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2; A... 116 5e-25
UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1; Can... 114 1e-24
UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1; Cenar... 113 3e-24
UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole gen... 108 7e-23
UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=... 106 3e-22
UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4; T... 99 3e-20
UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultu... 91 2e-17
UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6; H... 79 7e-14
UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13 prot... 69 9e-11
UniRef50_Q5CYT2 Cluster: 3CCCH domain containing protein; n=2; C... 36 0.80
UniRef50_A7FA74 Cluster: Putative uncharacterized protein; n=2; ... 36 0.80
UniRef50_A1CL62 Cluster: Ribosomal protein S15, putative; n=7; E... 35 1.1
UniRef50_Q30V16 Cluster: 3-deoxy-D-manno-octulosonate cytidylylt... 34 1.8
UniRef50_Q010Y2 Cluster: Helicase and polymerase containing prot... 33 3.2
UniRef50_A2QE31 Cluster: Remark: alternate name for S. cerevisia... 33 4.3
UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 - R... 33 5.6
UniRef50_Q75JZ0 Cluster: Similar to Dictyostelium discoideum (Sl... 33 5.6
UniRef50_Q5P8U4 Cluster: Helicase/SNF2 family domain protein; n=... 32 7.4
UniRef50_A3VN55 Cluster: 3-dehydroquinate synthase; n=3; Alphapr... 32 7.4
>UniRef50_P62277 Cluster: 40S ribosomal protein S13; n=117;
Eukaryota|Rep: 40S ribosomal protein S13 - Homo sapiens
(Human)
Length = 151
Score = 258 bits (632), Expect = 6e-68
Identities = 129/156 (82%), Positives = 138/156 (88%), Gaps = 4/156 (2%)
Frame = +1
Query: 67 MGRMHAPG*GY----LPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLR 234
MGRMHAPG G LP RR + TWLKLT+DDVKEQIYKL KKGLTPSQIGV+LR
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVP-----TWLKLTSDDVKEQIYKLAKKGLTPSQIGVILR 55
Query: 235 DSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRL 414
DSHGVAQVRFVTG KILRI+K+ GLAPDLPEDLY+LIKKAVA+RKHLERNRKDKD+KFRL
Sbjct: 56 DSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRL 115
Query: 415 ILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 522
IL+ESRIHRLARYYKTK VLPPNWKYESSTASALVA
Sbjct: 116 ILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151
>UniRef50_P59223 Cluster: 40S ribosomal protein S13-1; n=27;
Eukaryota|Rep: 40S ribosomal protein S13-1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 151
Score = 216 bits (528), Expect = 2e-55
Identities = 111/156 (71%), Positives = 123/156 (78%), Gaps = 4/156 (2%)
Frame = +1
Query: 67 MGRMHAPG*GY----LPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLR 234
MGRMH+ G G LP +R S +WLK T DV E I K KKGLTPSQIGV+LR
Sbjct: 1 MGRMHSRGKGISASALPYKRS-----SPSWLKTTPQDVDESICKFAKKGLTPSQIGVILR 55
Query: 235 DSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRL 414
DSHG+ QV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRL
Sbjct: 56 DSHGIPQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRL 115
Query: 415 ILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 522
ILVESRIHRLARYYK LPP WKYES+TAS LVA
Sbjct: 116 ILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
>UniRef50_Q4Q3M1 Cluster: 40S ribosomal protein S13, putative; n=39;
Eukaryota|Rep: 40S ribosomal protein S13, putative -
Leishmania major
Length = 151
Score = 184 bits (448), Expect = 1e-45
Identities = 94/156 (60%), Positives = 116/156 (74%), Gaps = 4/156 (2%)
Frame = +1
Query: 67 MGRMHAPG*GY----LPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLR 234
M RMH G G LP RR A WLK+ + +V + + K +KG+ PSQIG+ LR
Sbjct: 1 MVRMHGNGRGKASSALPYRRTPPA-----WLKIASRNVVKMVCKSSRKGMMPSQIGMELR 55
Query: 235 DSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRL 414
DS G+AQV+ VTG+KILRI+K GLAP++PEDLY+L+K+A MRKHLER+ D+D+K+RL
Sbjct: 56 DSMGIAQVKNVTGRKILRILKHNGLAPEIPEDLYFLVKRATQMRKHLERHTTDRDTKYRL 115
Query: 415 ILVESRIHRLARYYKTKSVLPPNWKYESSTASALVA 522
ILVESRIHRLARYYK LPP WKYESSTASA+VA
Sbjct: 116 ILVESRIHRLARYYKRVKQLPPTWKYESSTASAMVA 151
>UniRef50_UPI0000DA1E7F Cluster: PREDICTED: similar to ribosomal
protein S13; n=2; Rattus norvegicus|Rep: PREDICTED:
similar to ribosomal protein S13 - Rattus norvegicus
Length = 131
Score = 160 bits (388), Expect = 2e-38
Identities = 92/152 (60%), Positives = 103/152 (67%)
Frame = +1
Query: 67 MGRMHAPG*GYLPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHG 246
MG MHAP +V WLK T+DD+KEQIYKL KKGLTPSQIGV LRD+HG
Sbjct: 1 MGAMHAPRKALSQSVLPYHHSV-LMWLKSTSDDMKEQIYKLAKKGLTPSQIGVTLRDTHG 59
Query: 247 VAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 426
LA DLP DLY+LIKKAVA++KHLERNRKDKD+KF L L E
Sbjct: 60 --------------------LALDLPGDLYHLIKKAVAVQKHLERNRKDKDAKFCLSLTE 99
Query: 427 SRIHRLARYYKTKSVLPPNWKYESSTASALVA 522
SRIH LARY KTK +LPP+WKYES +ASALVA
Sbjct: 100 SRIHPLARYCKTKRMLPPSWKYESPSASALVA 131
>UniRef50_Q9AW88 Cluster: 40S ribosomal protein S13; n=1; Guillardia
theta|Rep: 40S ribosomal protein S13 - Guillardia theta
(Cryptomonas phi)
Length = 147
Score = 153 bits (370), Expect = 3e-36
Identities = 68/120 (56%), Positives = 93/120 (77%)
Frame = +1
Query: 142 WLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL 321
W+K + + + E I L KKGL PSQIG LRDS G+ V+ + G+ I++I+K GL P++
Sbjct: 22 WVKDSKEKINEIICNLAKKGLVPSQIGSYLRDSAGIPLVKNIAGRNIVKILKKNGLNPEI 81
Query: 322 PEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESS 501
PEDL++LIKKA+ ++KHLERN+KDKDSKFRLIL ES+IHRL+RYYK +P NW+++SS
Sbjct: 82 PEDLFFLIKKAINIKKHLERNKKDKDSKFRLILTESKIHRLSRYYKRIQRIPINWRFDSS 141
>UniRef50_P54012 Cluster: 30S ribosomal protein S15P/S13e; n=17;
Euryarchaeota|Rep: 30S ribosomal protein S15P/S13e -
Methanococcus jannaschii
Length = 153
Score = 141 bits (341), Expect = 1e-32
Identities = 70/151 (46%), Positives = 101/151 (66%)
Frame = +1
Query: 67 MGRMHAPG*GYLPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHG 246
M RMHA G +R + V W++ T + V++ + +L KKG +QIG++LRD++G
Sbjct: 1 MARMHARKRGRSGSKRPVRKEVPE-WVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYG 59
Query: 247 VAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 426
+ V+ +TGKKI +IMK GL P +PEDL L+++AV +RKHLE++ KD SK L L+E
Sbjct: 60 IPDVKLITGKKISKIMKEHGLYPKVPEDLLNLMRRAVNLRKHLEQHPKDLHSKRGLQLIE 119
Query: 427 SRIHRLARYYKTKSVLPPNWKYESSTASALV 519
S+I RL +YYK+K VLP +W+Y TA LV
Sbjct: 120 SKIRRLVKYYKSKGVLPADWRYTPETARLLV 150
>UniRef50_O29457 Cluster: 30S ribosomal protein S15P/S13e; n=7;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Archaeoglobus fulgidus
Length = 152
Score = 121 bits (291), Expect = 1e-26
Identities = 61/142 (42%), Positives = 93/142 (65%)
Frame = +1
Query: 67 MGRMHAPG*GYLPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHG 246
M R+HA G +R + W+ ++ ++V++++ +L +G PS IG++LRD +G
Sbjct: 1 MARIHARRRGKSGSKRIYRDSPPE-WVDMSPEEVEKKVLELYNEGYEPSMIGMILRDRYG 59
Query: 247 VAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 426
+ V+ VTGKKI +I+K G+ PEDL LIKKA+ +R HLE +RKDK ++ L L+E
Sbjct: 60 IPSVKQVTGKKIQKILKEHGVEIKYPEDLKALIKKALKLRAHLEVHRKDKHNRRGLQLIE 119
Query: 427 SRIHRLARYYKTKSVLPPNWKY 492
++I RL+ YYK K VLP +WKY
Sbjct: 120 AKIWRLSSYYKEKGVLPADWKY 141
>UniRef50_Q9V2K9 Cluster: 30S ribosomal protein S15P/S13e; n=19;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Pyrococcus abyssi
Length = 158
Score = 119 bits (287), Expect = 4e-26
Identities = 66/158 (41%), Positives = 95/158 (60%), Gaps = 7/158 (4%)
Frame = +1
Query: 67 MGRMHAPG*GYLPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHG 246
M RMHA G +R A WL+ T +D++ + KL K+G + + IG +LRD +G
Sbjct: 1 MARMHARKRGKSGSKRPPRTAPPI-WLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYG 59
Query: 247 VAQVRFVT-----GKK--ILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSK 405
+ V+ +K I RI++ GLAP++PEDL +LIK+AV +RKHLE++ KD S
Sbjct: 60 IPTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSM 119
Query: 406 FRLILVESRIHRLARYYKTKSVLPPNWKYESSTASALV 519
L L+ES+I RL +YYK K LP +W+Y+ A LV
Sbjct: 120 RGLQLIESKIRRLVKYYKRKGKLPKDWRYDPEQAKLLV 157
>UniRef50_Q8SRB3 Cluster: 40S ribosomal protein S13; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S13
- Encephalitozoon cuniculi
Length = 148
Score = 118 bits (284), Expect = 9e-26
Identities = 56/141 (39%), Positives = 83/141 (58%)
Frame = +1
Query: 67 MGRMHAPG*GYLPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHG 246
M +MH+ G G + A TWL + D++K + ++G KG+ IG LRD +G
Sbjct: 1 MAKMHSSGKGRSGSVKPYATAFP-TWLTKSVDEIKSDVIQMGNKGVPAPDIGTRLRDEYG 59
Query: 247 VAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 426
+ + V G+ I R ++ G+ P +P DL L+ +A +R HL RKD +K+RLILV
Sbjct: 60 IGKASDVLGESITRFLQRNGVVPKIPHDLESLVHRANTLRSHLNIYRKDNSAKYRLILVS 119
Query: 427 SRIHRLARYYKTKSVLPPNWK 489
SR++R+ARYYK K +P NWK
Sbjct: 120 SRMYRVARYYKRKMRIPGNWK 140
>UniRef50_Q74MB8 Cluster: 30S ribosomal protein S15P/S13e; n=2;
Archaea|Rep: 30S ribosomal protein S15P/S13e -
Nanoarchaeum equitans
Length = 154
Score = 116 bits (278), Expect = 5e-25
Identities = 52/122 (42%), Positives = 77/122 (63%)
Frame = +1
Query: 142 WLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL 321
W + V+ +I +L K+G +P+ IG++LRD +G+ VR GK + ++ GL PD+
Sbjct: 27 WAPYDKEFVENKIIELAKQGYSPAMIGLILRDQYGIPDVRLYIGKSLQDFLEEKGLLPDI 86
Query: 322 PEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESS 501
P DL YL+K+A + KH+E N +D +K L+ S+IHRLA+YYK K VLP +WKY
Sbjct: 87 PWDLIYLLKRAYRVYKHIELNPRDTQAKRNYQLIISKIHRLAKYYKRKGVLPKDWKYSIE 146
Query: 502 TA 507
A
Sbjct: 147 IA 148
>UniRef50_A7DPJ7 Cluster: Ribosomal S13S15-like protein; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Ribosomal
S13S15-like protein - Candidatus Nitrosopumilus
maritimus SCM1
Length = 149
Score = 114 bits (274), Expect = 1e-24
Identities = 56/147 (38%), Positives = 88/147 (59%)
Frame = +1
Query: 67 MGRMHAPG*GYLPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHG 246
MGRMH G R T +W+ + +++E + K K GLTPSQIG+ LRD H
Sbjct: 1 MGRMHTHRHGKSHSIRPATLRAP-SWITQSPAEIEELVIKYSKDGLTPSQIGIKLRDQHS 59
Query: 247 VAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 426
+ ++ +T K I I++ L ++PEDL ++KKAV +++HL+ N+ D+ + L L+E
Sbjct: 60 IPLIKPITKKTIGEILEENDLKAEMPEDLENIVKKAVGLQRHLKENKGDRRNVRSLELIE 119
Query: 427 SRIHRLARYYKTKSVLPPNWKYESSTA 507
+++HRL+ YYK +P WKY+S A
Sbjct: 120 AKVHRLSVYYKKIGRIPATWKYKSVVA 146
>UniRef50_A0RTT1 Cluster: Ribosomal protein S15P/S13E; n=1;
Cenarchaeum symbiosum|Rep: Ribosomal protein S15P/S13E -
Cenarchaeum symbiosum
Length = 148
Score = 113 bits (271), Expect = 3e-24
Identities = 57/147 (38%), Positives = 91/147 (61%)
Frame = +1
Query: 67 MGRMHAPG*GYLPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHG 246
MGR+H+ G R ++ + +W++ +V++ I K K+GL PSQIG LRD H
Sbjct: 1 MGRLHSHRHGKSHSIRP-SSPKAPSWIQ-GPGEVEDLIVKYAKEGLAPSQIGSKLRDQHA 58
Query: 247 VAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 426
+ R +TGK + +IM+ G P+LPEDL +++KAV +++HL N+ D+ + L L+E
Sbjct: 59 IPLTRPITGKSVTQIMEEHGATPELPEDLNNIVQKAVGLQRHLRANKGDRRNVRSLELIE 118
Query: 427 SRIHRLARYYKTKSVLPPNWKYESSTA 507
+++HRL YYK +P +WKY+S A
Sbjct: 119 AKVHRLDVYYKRIGRIPKDWKYKSVVA 145
>UniRef50_A7QVA3 Cluster: Chromosome chr2 scaffold_187, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_187, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 129
Score = 108 bits (260), Expect = 7e-23
Identities = 49/61 (80%), Positives = 55/61 (90%)
Frame = +1
Query: 307 LAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNW 486
L P++PEDLY+LIKKAVA+RKHLER+RKDKDSKFRLI+VESRIHRLARYYK LPP W
Sbjct: 69 LGPEIPEDLYHLIKKAVAIRKHLERSRKDKDSKFRLIVVESRIHRLARYYKRTKKLPPVW 128
Query: 487 K 489
K
Sbjct: 129 K 129
>UniRef50_Q40939 Cluster: Small subunit ribosomal protein S13; n=1;
Bigelowiella natans|Rep: Small subunit ribosomal protein
S13 - Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 183
Score = 106 bits (255), Expect = 3e-22
Identities = 59/146 (40%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Frame = +1
Query: 67 MGRMHAPG*GYLPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKG-LTPSQIGVMLRDSH 243
MG+M++ G G + S W LT+ ++ + I L K L PS+IG++LRD
Sbjct: 1 MGKMYSKGKG-ISSTTVPYRKYSCEWKGLTSQNLIKIIANLAKNNNLPPSKIGLVLRDEK 59
Query: 244 GVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILV 423
V R ++G I +I++ GL P +PEDL+YLIKKA ++ HL + D +++ L L+
Sbjct: 60 LVVDTRNISGMNISKILRLKGLVPLVPEDLFYLIKKANKIKAHLSDFKHDLANRYHLNLI 119
Query: 424 ESRIHRLARYYKTKSVLPPNWKYESS 501
ES I+RL+RYYK LP NWKY S+
Sbjct: 120 ESHIYRLSRYYKRIFRLPKNWKYISN 145
>UniRef50_Q6L2H3 Cluster: 30S ribosomal protein S15P/S13e; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S15P/S13e -
Picrophilus torridus
Length = 146
Score = 99 bits (238), Expect = 3e-20
Identities = 52/143 (36%), Positives = 81/143 (56%)
Frame = +1
Query: 67 MGRMHAPG*GYLPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHG 246
M RMH G +R + +W++ + D++KE I K+ K+G+T S IG+ LRD +
Sbjct: 1 MARMHTRKRGRSGSKR-IEVRERPSWIQYSDDEIKEMIVKMRKQGMTKSMIGIRLRDQYA 59
Query: 247 VAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 426
+ R V K+ +++K L D+PEDL LI++ KHL N+ D ++K + L+
Sbjct: 60 IPGTRPVLHMKLGQVLKENNLESDVPEDLQALIERYKRAMKHLSLNKHDMNNKRKAQLIM 119
Query: 427 SRIHRLARYYKTKSVLPPNWKYE 495
S++ RL RYYK S LP +W E
Sbjct: 120 SKMLRLIRYYKRTSRLPQDWSLE 142
>UniRef50_Q9P9B8 Cluster: 30S ribosomal protein S15; n=1; uncultured
marine group II euryarchaeote 37F11|Rep: 30S ribosomal
protein S15 - uncultured marine group II euryarchaeote
37F11
Length = 151
Score = 90.6 bits (215), Expect = 2e-17
Identities = 45/126 (35%), Positives = 71/126 (56%)
Frame = +1
Query: 142 WLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL 321
W A +++ I + K G++ +QIG +LRD H V VR V GK+I ++ +
Sbjct: 25 WSNKDAKEIESLILQYFKDGMSTAQIGTILRDKHAVPNVRLVLGKRIGAVLSENDESGTY 84
Query: 322 PEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESS 501
PEDL L+++AVA+ +HL N +D +K L L E++I RL YYK + L +W+Y+
Sbjct: 85 PEDLMNLMRQAVAIIEHLTTNSRDLHNKRSLELTEAKIRRLGNYYKAEGRLDSDWRYKRD 144
Query: 502 TASALV 519
+V
Sbjct: 145 QLRLIV 150
>UniRef50_P05762 Cluster: 30S ribosomal protein S15P/S13e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S15P/S13e -
Haloarcula marismortui (Halobacterium marismortui)
Length = 156
Score = 79.0 bits (186), Expect = 7e-14
Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Frame = +1
Query: 142 WLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDS--HG--VAQVRFVTGKKILRIMKAMGL 309
W + D ++ ++ +L ++G +PS+IG+ LRD G + V TGKK+ I++
Sbjct: 25 WSDVDEDAIEARVVELAEQGHSPSEIGLKLRDEGVQGTPIPDVSLATGKKVTEILEENEA 84
Query: 310 APDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 489
PDLPEDL L+++AV +R H++ N D +K L +S+I RL YY+ V N+
Sbjct: 85 EPDLPEDLRNLLERAVRLRDHMDENPGDYQNKRALQNTQSKIRRLIDYYRGDEV-DENFT 143
Query: 490 YESSTA 507
Y A
Sbjct: 144 YSYDNA 149
>UniRef50_UPI0000E23CD6 Cluster: PREDICTED: similar to Rps13
protein; n=2; Pan troglodytes|Rep: PREDICTED: similar to
Rps13 protein - Pan troglodytes
Length = 269
Score = 68.5 bits (160), Expect = 9e-11
Identities = 36/56 (64%), Positives = 40/56 (71%)
Frame = +1
Query: 70 GRMHAPG*GYLPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRD 237
GR+H PG G L L TWLKLT+D+VKEQIYKL KKGLTP QIGV+LRD
Sbjct: 215 GRIHVPGKG-LSRSALLYHHSVPTWLKLTSDNVKEQIYKLTKKGLTPPQIGVILRD 269
>UniRef50_Q5CYT2 Cluster: 3CCCH domain containing protein; n=2;
Cryptosporidium|Rep: 3CCCH domain containing protein -
Cryptosporidium parvum Iowa II
Length = 591
Score = 35.5 bits (78), Expect = 0.80
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +1
Query: 127 AVSXTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMG 306
A T L++T D K + + K G+ GV+ R +HG A++R T K +LR K
Sbjct: 150 AHGTTELRVTNDFYKTSVCRYWKMGVK-CDAGVLCRHAHGEAELRKKTNKHLLR-RKDDQ 207
Query: 307 LAPDLPED 330
L P + ED
Sbjct: 208 LPPSIRED 215
>UniRef50_A7FA74 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 1159
Score = 35.5 bits (78), Expect = 0.80
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 123 RRSVPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWS 248
RR +P V+ DC C N W+ G + CN+ G W+
Sbjct: 927 RRKLPGNVQRDCANCHTKNTPEWRRGPSGNRDLCNSCGLRWA 968
>UniRef50_A1CL62 Cluster: Ribosomal protein S15, putative; n=7;
Eurotiomycetidae|Rep: Ribosomal protein S15, putative -
Aspergillus clavatus
Length = 306
Score = 35.1 bits (77), Expect = 1.1
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 340 LIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKY 492
L K + + +HL+ KDK +K L L+ + +L RY + K P W++
Sbjct: 238 LTAKIINLSRHLQSTNKDKHNKRNLRLLVHKRQKLLRYLRKKERGGPRWQH 288
>UniRef50_Q30V16 Cluster: 3-deoxy-D-manno-octulosonate
cytidylyltransferase; n=6; Proteobacteria|Rep:
3-deoxy-D-manno-octulosonate cytidylyltransferase -
Desulfovibrio desulfuricans (strain G20)
Length = 257
Score = 34.3 bits (75), Expect = 1.8
Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Frame = +1
Query: 43 RFSKKPANMGRMHA-PG*GYLPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKGLTPSQI 219
RF KP + +H P G++ R + AVS TW+ +++ E K G K + +
Sbjct: 15 RFPGKP--LADIHGVPMVGHVALRTAMAPAVSETWIATCDEEIMEYARKAGIKAVMTADT 72
Query: 220 GVMLRD--SHGVAQVRFVTGKKILRIMKAMGLAPDLPEDL 333
D + + ++ +TGK + ++ G P + D+
Sbjct: 73 HERCTDRTAEAMLKIEEMTGKSVDIVVMVQGDEPMVTPDM 112
>UniRef50_Q010Y2 Cluster: Helicase and polymerase containing protein
TEBICHI; n=2; Ostreococcus|Rep: Helicase and polymerase
containing protein TEBICHI - Ostreococcus tauri
Length = 1489
Score = 33.5 bits (73), Expect = 3.2
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Frame = +1
Query: 100 LPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTG-- 273
LP RR + + W KLTA DV++ + G+ GL S ++ + R +
Sbjct: 394 LPARRVILRDTNMGWKKLTARDVQQMCGRAGRAGLDASGSAIVFCQKRADLEKRLTSAVA 453
Query: 274 ----KKILRIMKAMGLAPDLPEDLYYLIK 348
++I+ A GL PED+ +K
Sbjct: 454 EIGMRRIMLEAVASGLV-KTPEDVLAYVK 481
>UniRef50_A2QE31 Cluster: Remark: alternate name for S. cerevisiae
MRPS28: YDR337w. precursor; n=1; Aspergillus niger|Rep:
Remark: alternate name for S. cerevisiae MRPS28:
YDR337w. precursor - Aspergillus niger
Length = 280
Score = 33.1 bits (72), Expect = 4.3
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 340 LIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 489
L K + + +HL+ +KD+ +K L L+ + +L RY + K P W+
Sbjct: 212 LTAKIMNLSRHLQTTKKDRHNKRNLRLLVHKRQKLLRYLRRKERGGPRWQ 261
>UniRef50_Q7TP70 Cluster: Ab2-079; n=3; Eutheria|Rep: Ab2-079 -
Rattus norvegicus (Rat)
Length = 481
Score = 32.7 bits (71), Expect = 5.6
Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = +1
Query: 61 ANMGRMHAPG*GY----LPXRRCLTAAVSXTWLKLTADDVK 171
A +GRMHAPG G LP RR + WLKL +DDVK
Sbjct: 442 AIVGRMHAPGKGLSQSALPYRRSV-----LMWLKLMSDDVK 477
>UniRef50_Q75JZ0 Cluster: Similar to Dictyostelium discoideum (Slime
mold). Homeobox-containing protein; n=2; Dictyostelium
discoideum|Rep: Similar to Dictyostelium discoideum
(Slime mold). Homeobox-containing protein -
Dictyostelium discoideum (Slime mold)
Length = 519
Score = 32.7 bits (71), Expect = 5.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 123 RRSVPYLVEIDCRRCKGTNLQTWKEGSHSLTNWCNAEGFTWS 248
RR L+ CR CK T W++G + CNA G ++
Sbjct: 451 RREASRLLNNVCRNCKTTETPEWRKGPDGTKSLCNACGLHYA 492
>UniRef50_Q5P8U4 Cluster: Helicase/SNF2 family domain protein; n=1;
Azoarcus sp. EbN1|Rep: Helicase/SNF2 family domain
protein - Azoarcus sp. (strain EbN1) (Aromatoleum
aromaticum (strain EbN1))
Length = 883
Score = 32.3 bits (70), Expect = 7.4
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 172 EQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVT-GKKILRIMKAMGLAPDLPEDLYYLI 345
+++ +L + G T S V LR+ H V + + +K+ IM A+G A D PEDL L+
Sbjct: 563 QRVGRLNRYGQTQSVEVVSLRNPHTVESMIWEKLEEKLGNIMLALGSAMDEPEDLLQLV 621
>UniRef50_A3VN55 Cluster: 3-dehydroquinate synthase; n=3;
Alphaproteobacteria|Rep: 3-dehydroquinate synthase -
Parvularcula bermudensis HTCC2503
Length = 371
Score = 32.3 bits (70), Expect = 7.4
Identities = 16/52 (30%), Positives = 32/52 (61%)
Frame = +1
Query: 274 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVES 429
K++ R++ GL P P+D+ LI A R +++++K + + RL+L+E+
Sbjct: 291 KRVERMIADSGL-PTRPQDIPGLITSAAEQRAFMQQDKKVEAGQLRLVLLEA 341
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 488,260,085
Number of Sequences: 1657284
Number of extensions: 8940938
Number of successful extensions: 21732
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 21209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21722
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34989170748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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