Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_F16
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...   214   8e-57
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    30   0.25 
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    28   1.0  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   1.8  
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    27   1.8  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    25   5.5  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   7.2  

>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  214 bits (522), Expect = 8e-57
 Identities = 104/152 (68%), Positives = 119/152 (78%)
 Frame = +1

Query: 67  MGRMHAPG*GYLPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHG 246
           MGRMH+ G G          +    W K  AD V EQI K  KKG++PSQIGV LRDSHG
Sbjct: 1   MGRMHSKGKGIASSALPYVRS-PPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHG 59

Query: 247 VAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 426
           + QVRF+TG+KI+RI+KA GLAP+LPEDLY LIKKAV++RKHLERNRKDKDSKFRLIL+E
Sbjct: 60  IPQVRFITGQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIE 119

Query: 427 SRIHRLARYYKTKSVLPPNWKYESSTASALVA 522
           SRIHRLARYY+    LPP WKYES+TASALVA
Sbjct: 120 SRIHRLARYYRKVGALPPTWKYESATASALVA 151


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 20/81 (24%), Positives = 39/81 (48%)
 Frame = +1

Query: 256 VRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRI 435
           +R    KK+   +KA G      EDL +L    +   +  +  +++K    RL ++  RI
Sbjct: 623 IRINEAKKLAEELKAKGGLEVNAEDLEHLDADKLRAMQIEQVEKQNKSMNERLRVIGKRI 682

Query: 436 HRLARYYKTKSVLPPNWKYES 498
             L R Y+ +++  P W+ ++
Sbjct: 683 DHLERAYRREAI--PLWEEDA 701


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +1

Query: 367 KHLERNRKDKDSKFRLILVESRIHRLARYYKTKS 468
           K+  R +K+ D ++  +LVESR+H L R+  +K+
Sbjct: 32  KYQWREQKESD-EYDYVLVESRLHELRRHRLSKN 64


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +1

Query: 274 KKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARY 453
           KKI+ I     L      D YYL KKA  + +    N  +K+SK   I +E +  +    
Sbjct: 183 KKIIDIFDQFPLLTKKYWD-YYLFKKAFLILEDANLNSFEKNSKLEEIRIEKKSLKQYSP 241

Query: 454 YKTKSVLPPNW 486
              +  L  +W
Sbjct: 242 VNLEKYLTKSW 252


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +1

Query: 154 TADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDL--PE 327
           ++DD   Q  +     L   QIG+ L D  G A V   T     +      L  D+  PE
Sbjct: 66  SSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACT----WQFNFTFNLQDDMYAPE 121

Query: 328 DLYYLIKKAVAMRKHLE 378
            +  L K  +  +KH E
Sbjct: 122 SIELLTKSGIDFKKHQE 138


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +1

Query: 271 GKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDK 396
           G+ + ++  A  +    PE+L+  +KK+ + +K   +  K K
Sbjct: 192 GRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPK 233


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 135 GHCGGKAAPXWEIPLXRSVHTTHVCXLFTKSP 40
           GHCGG+A P    PL + +  +    +FT  P
Sbjct: 708 GHCGGQAPP---FPLLKVIIDSIPVHVFTADP 736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,434
Number of Sequences: 5004
Number of extensions: 37408
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)