Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_F16
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95...   189   1e-48
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95...   173   6e-44
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009...   171   3e-43
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416    144   5e-35
04_04_1209 + 31755637-31755821,31756017-31756165,31756703-317568...    29   2.4  
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110...    27   9.7  

>08_01_0119 -
           951492-951679,951780-951918,952023-952095,952196-952218
          Length = 140

 Score =  189 bits (460), Expect = 1e-48
 Identities = 93/141 (65%), Positives = 106/141 (75%)
 Frame = +1

Query: 67  MGRMHAPG*GYLPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHG 246
           MGRMH+ G G +            +W+K  A DV+E I K  KKG  PSQIGV+LRD HG
Sbjct: 1   MGRMHSRGKG-ISSSAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHG 59

Query: 247 VAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE 426
           +  V+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVE
Sbjct: 60  IPLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVE 119

Query: 427 SRIHRLARYYKTKSVLPPNWK 489
           SRIHRLARYYK    LPP WK
Sbjct: 120 SRIHRLARYYKRTKKLPPTWK 140


>08_01_0120 -
           957365-957552,957642-957780,957847-957970,958398-958486
          Length = 179

 Score =  173 bits (422), Expect = 6e-44
 Identities = 82/108 (75%), Positives = 91/108 (84%)
 Frame = +1

Query: 166 VKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLI 345
           V+E I K  KKG  PSQIGV+LRD HG+  V+ VTG KILRI+KA GLAP++PEDLY+LI
Sbjct: 72  VEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAPEIPEDLYFLI 131

Query: 346 KKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWK 489
           KKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK    LPP WK
Sbjct: 132 KKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWK 179


>07_03_0978 +
           23099690-23100108,23100530-23100564,23100868-23100926,
           23101269-23101310,23102003-23102065,23102172-23102253,
           23102570-23102609,23102657-23102753
          Length = 278

 Score =  171 bits (416), Expect = 3e-43
 Identities = 86/145 (59%), Positives = 107/145 (73%), Gaps = 4/145 (2%)
 Frame = +1

Query: 67  MGRMHAPG*GY----LPXRRCLTAAVSXTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLR 234
           MGRMH+ G G     LP RR   A     W+K +A +V+E I ++ KKG  PSQIG +LR
Sbjct: 1   MGRMHSSGKGMSCSVLPYRRAAPA-----WVKTSASEVEEMIVRVAKKGQLPSQIGAILR 55

Query: 235 DSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRL 414
           D+H V   + VTG KILR++K+ GLAP++PEDLY+LIKKAVAMRKHLERNRKDKD+KFRL
Sbjct: 56  DAHAVPLAQGVTGGKILRVLKSRGLAPEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRL 115

Query: 415 ILVESRIHRLARYYKTKSVLPPNWK 489
           ILVESR+HRL RYY+    +P  +K
Sbjct: 116 ILVESRVHRLTRYYRLAKKIPAFFK 140


>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
          Length = 218

 Score =  144 bits (348), Expect = 5e-35
 Identities = 70/106 (66%), Positives = 80/106 (75%)
 Frame = +1

Query: 163 DVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYL 342
           +V+E I K  K G   SQIGV+LR  HG+  V+ +   KIL I+KA GLAP + EDLY+L
Sbjct: 89  EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKILHILKAHGLAPKILEDLYFL 148

Query: 343 IKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPP 480
           IKKAVA+RKHLERNRKDKDS FRLILVESRIHRL RYYK    LPP
Sbjct: 149 IKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTKKLPP 194


>04_04_1209 +
           31755637-31755821,31756017-31756165,31756703-31756845,
           31756902-31757024
          Length = 199

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
 Frame = +1

Query: 277 KILRIMKAMGL-APD--LPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVE----SRI 435
           KI R+++A+   A D  LP +L   ++ AV MR    R+RK+KD++  ++++E     R 
Sbjct: 105 KITRVLRAVHTGAHDRRLPGNLDKTVRVAV-MRPKTSRSRKEKDAEEEVLVIEGIERERE 163

Query: 436 HRLARY 453
           HR   Y
Sbjct: 164 HRGGEY 169


>06_03_1379 -
           29709532-29709843,29709951-29710112,29710193-29711086,
           29712741-29712812,29714106-29714210,29714820-29714900
          Length = 541

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 316 DLPEDLYYLIKK-AVAMRKHLERNRKDKDSKFRL 414
           DLPE    L++  AVA R  LE++R   D+ FR+
Sbjct: 24  DLPEQQPQLMENVAVAKRSRLEQHRTLSDNSFRV 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,328,225
Number of Sequences: 37544
Number of extensions: 254791
Number of successful extensions: 616
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)