Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_F14
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    28   1.1  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    27   2.0  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    27   2.0  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    26   4.5  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           26   4.5  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    25   6.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   6.0  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   7.9  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   7.9  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    25   7.9  

>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 97  QTNKM-ADRQHFPSAITEAVSSNTACPDTGPKAETTN 204
           +TN++    +HFP+   E   ++   P TGP  E+T+
Sbjct: 377 ETNQIPTTEEHFPATTEEVAPASEEKPATGPAEESTS 413


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -2

Query: 242 DSIVIFFWSSRKMFVV--SAFGPVSGHAVFE 156
           D+I + F S+R +  V  S FG ++GHAVFE
Sbjct: 244 DAIPLKFLSARCLKFVRPSLFGYITGHAVFE 274


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 90  SNSNKQNGGSSTFSIRHHGSRLFEHGVPRHRTESRNN 200
           SN  +Q GG ST+ I  HG R    G   + + + NN
Sbjct: 170 SNELEQFGGESTYFITKHGVRTLAMGFLFNFSSNANN 206


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 85  LSQIQTNKMADRQHFPSAITEAVSSNTA 168
           LS + T K +D +H   + T  VSSNTA
Sbjct: 168 LSNVFTEKSSDYRHGLGSPTSLVSSNTA 195


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 263  ELNTCFDDSIVIFFWSSRKMFVVSAFGP 180
            EL+ CF+D+I  F+       V   F P
Sbjct: 1018 ELHRCFEDTISFFYNKKNPKVVTGVFNP 1045


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 98  KQTKWRIVNIFHPPSRKPSLRTRRAPTPDRKQKQQ 202
           K+ + +I  +  PPS+KP   T   P PD + K++
Sbjct: 346 KEVERKIEKLLEPPSQKP---TVALPVPDDRPKRR 377


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +2

Query: 434 KPPXG-WAANCPLPXPMGGSRSPKQGSLKLAASSLSMP 544
           KPP G  ++N  LP P    RS   GS+ L     S P
Sbjct: 324 KPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP 361


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 86  CLKFKQTKWRIVNIFHPPS 142
           C    Q +W I  IFHPP+
Sbjct: 357 CFLSVQLRWFITYIFHPPA 375


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 75  NEIVVSNSNKQNGGSSTFSIRHHGSRLFEHGV 170
           + ++++  +K N  S   SIR   ++ FEHG+
Sbjct: 176 SNVIMAADSKHNYSSGRPSIRLQSTQYFEHGL 207


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 410 RGGGSVAPKPPXGWAANCPLP 472
           RG G  AP PP G+    P P
Sbjct: 122 RGVGYTAPPPPAGFGRGAPPP 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,532
Number of Sequences: 5004
Number of extensions: 52974
Number of successful extensions: 162
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)