Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_F14
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73969-4|CAA98235.2|  428|Caenorhabditis elegans Hypothetical pr...    41   5e-04
AF101312-2|AAC69222.2|  475|Caenorhabditis elegans Hypothetical ...    31   0.59 
U64609-4|AAB04601.3|  336|Caenorhabditis elegans Serpentine rece...    30   1.4  
Z75554-2|CAA99954.1|  526|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z83129-3|CAB05641.1|  300|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   2.4  
U70858-4|AAB09178.1|  294|Caenorhabditis elegans Serpentine rece...    28   4.1  
AF003137-9|AAB93646.3|  883|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z83129-5|CAB05643.1|  349|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF100669-3|AAK39266.1|  747|Caenorhabditis elegans Hypothetical ...    28   5.5  
M77697-3|AAA27898.3|  616|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical ...    27   7.2  
AL033514-1|CAA22081.2|  275|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF172092-1|AAD48876.1|  275|Caenorhabditis elegans homeodomain p...    27   7.2  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF038622-1|AAB94152.1|  358|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z73969-4|CAA98235.2|  428|Caenorhabditis elegans Hypothetical
           protein C12D8.5 protein.
          Length = 428

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
 Frame = +1

Query: 313 ILYVIYKSYISPVFYKKELTEVG-FDHIPQ--GPDKGRRISRAQASXRMGSKLPPPXPNG 483
           I+Y+I+ + + P+   + L +VG F   P+  G  + R++ R +   R+G  +PP  PNG
Sbjct: 23  IVYLIHIT-LKPLNRVRRLGDVGLFFGKPELKGFYRERQLERLKLLRRVGD-MPPVFPNG 80

Query: 484 WFAVAETRELKVGSVLSIDALG 549
           W+ V E+ +L    ++ I  LG
Sbjct: 81  WYCVCESEKLANNQIMEITVLG 102


>AF101312-2|AAC69222.2|  475|Caenorhabditis elegans Hypothetical
           protein F56E10.3 protein.
          Length = 475

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 377 TSVSSFL*KTGLI-YDLYITYKIAENANIKVSIKIYSTIELNTCFDDSIVIFFWSSRKM 204
           T+VS FL KT L  + +++  K     N+  S+K ++      CF     IFFW  RKM
Sbjct: 99  TTVSFFL-KTRLKKFQIFLPTKNPSACNL-ASLKTFTEAYTTCCFYFQSAIFFWIGRKM 155


>U64609-4|AAB04601.3|  336|Caenorhabditis elegans Serpentine
           receptor, class m protein2 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +1

Query: 202 NIFLLLQKNITIESSKHVFSSIVEYILILTLMFAFSAILYVIYKSYISPVF 354
           NI+  ++K +  +++K     I   IL+L  +F F  I    Y+S+I P+F
Sbjct: 221 NIYKQMKKKMLSDAAKKSQQQI-NLILLLQFLFPFLLIHIPFYESFIFPIF 270


>Z75554-2|CAA99954.1|  526|Caenorhabditis elegans Hypothetical
           protein ZC455.3 protein.
          Length = 526

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 344 LIYDLYITYKIAENANIKVSIKIYSTIELNTCFDDSIVIFFWSSR 210
           +IYD Y   KI +N NI+V        E     + S+  FFW ++
Sbjct: 53  IIYDYYAHKKIVKNPNIEVINYEVDEEEKAAASEASVFKFFWKAK 97


>Z83129-3|CAB05641.1|  300|Caenorhabditis elegans Hypothetical
           protein W06G6.6 protein.
          Length = 300

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 305 SPRFCMLYTSHISVLFSIKRN*QKSASIIYLKVRTRGGGSVAP 433
           S  FC+   SH  + FS+  N +K+A +++   R +   SV P
Sbjct: 255 SALFCLNSASHCLINFSMSTNYRKAAKMVFFANRKQMNTSVLP 297


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = -1

Query: 498 GDREPPIGXGRGQFAAHPXGGLGATDPPP 412
           G   PP G G G F   P GG GA  PPP
Sbjct: 421 GSYGPPQG-GPGGFGPPPPGGPGAYGPPP 448



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -1

Query: 501 FGDREPPIGXGRGQFAAHPXGG-LGATDPPP 412
           FG   PP+    G FA  P  G  GA  PPP
Sbjct: 364 FGGPPPPVSSAPGNFAPPPQSGPPGAFAPPP 394


>U70858-4|AAB09178.1|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein33 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -2

Query: 377 TSVSSFL*KTGL-IYDLYITYKIAENANIKVSIKIYSTIELNTCFDDSIVIFFWSSRKMF 201
           T V SF     L +Y LYIT  I   + + +    ++   L  C++ SI   F SS   F
Sbjct: 43  TLVKSFFDAIYLTVYFLYITPMIIFASQLMIYCSHWAGYVLIVCYEISIHTHFLSSVNRF 102

Query: 200 VVSAFGPVSGHAVFEETAS 144
            ++ F P S   +F   A+
Sbjct: 103 -IAVFFPFSYKNIFSPCAT 120


>AF003137-9|AAB93646.3|  883|Caenorhabditis elegans Hypothetical
            protein C27A12.9 protein.
          Length = 883

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
 Frame = +1

Query: 154  SSNTACPDTGPKAETTNIFLLLQKNIT-IESSKH--------VFSSIVEYILILTLMFAF 306
            S   + P+T      T + + ++  +T + SS H        +F+    +  ILT++F F
Sbjct: 797  SQKMSAPNTAWTLTETLVLMTIRATLTCLVSSIHRRHLMVWKIFAPKFIFECILTIVFIF 856

Query: 307  SAILYVIYKSYISPVFYKKE 366
            SA  ++IY+ +    F   E
Sbjct: 857  SANFFLIYRQFFGEKFKNSE 876


>Z83129-5|CAB05643.1|  349|Caenorhabditis elegans Hypothetical
           protein W06G6.8 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 305 SPRFCMLYTSHISVLFSIKRN*QKSASIIYLKVRTRGGGSV 427
           S  FC+   SH  + FS+  N +K+A +++   R +   SV
Sbjct: 298 SALFCLNSASHCLINFSMSTNYRKAAKMVFFANRKQSSTSV 338


>AF100669-3|AAK39266.1|  747|Caenorhabditis elegans Hypothetical
           protein R11E3.4 protein.
          Length = 747

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/39 (48%), Positives = 21/39 (53%)
 Frame = +1

Query: 115 DRQHFPSAITEAVSSNTACPDTGPKAETTNIFLLLQKNI 231
           +R HF   I  A S N AC   G K  T NI LL +KNI
Sbjct: 370 ERNHFFDTIGFACSENCAC---GGKC-TNNITLLPEKNI 404


>M77697-3|AAA27898.3|  616|Caenorhabditis elegans Hypothetical
           protein B0303.4 protein.
          Length = 616

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 366 TDRSRLRSYTSRSGQGEADQSRPS 437
           T R +LR  T RSG    D+SRPS
Sbjct: 168 TYRPQLRPPTERSGNTRVDESRPS 191


>AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical
           protein Y56A3A.6 protein.
          Length = 798

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 340 ISPVFYKKELTEVGFDHIPQGPDKGRRISRAQASXRMGSKLPPPXP 477
           IS V    +L +VG      G   G+ +   +AS    S  PPP P
Sbjct: 713 ISDVLKGPKLRKVGMPAEKSGISLGKVVESVEASGNRPSSTPPPPP 758


>AL033514-1|CAA22081.2|  275|Caenorhabditis elegans Hypothetical
           protein Y75B8A.1 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 98  KQTKWRIVNIFHPPSRKPSLRTRRAPTPDRKQKQQT 205
           KQ +W +    H   R+  +  +     D+KQKQ+T
Sbjct: 226 KQKRWELAKYLHLTERQVKIWFQNRRMKDKKQKQRT 261


>AF172092-1|AAD48876.1|  275|Caenorhabditis elegans homeodomain
           protein PHP-3 protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 98  KQTKWRIVNIFHPPSRKPSLRTRRAPTPDRKQKQQT 205
           KQ +W +    H   R+  +  +     D+KQKQ+T
Sbjct: 226 KQKRWELAKYLHLTERQVKIWFQNRRMKDKKQKQRT 261


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 140 SRKPSLRTRRAPTPDRKQK 196
           SR P  RTRR+P+P R+++
Sbjct: 104 SRSPPRRTRRSPSPPRRRR 122


>AF038622-1|AAB94152.1|  358|Caenorhabditis elegans Hypothetical
           protein R07C12.3 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -2

Query: 341 IYDLYITYKIAENANIKVSIKIYSTI 264
           IY++ + Y  ++N+ IK+ I++Y+ I
Sbjct: 308 IYNMTLDYSYSDNSPIKIQIRLYTWI 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,082,036
Number of Sequences: 27780
Number of extensions: 311999
Number of successful extensions: 980
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)