Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_F13
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   180   1e-46
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    27   1.3  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    27   1.3  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   3.0  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    26   3.0  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    26   4.0  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   5.2  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    25   9.1  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  180 bits (438), Expect = 1e-46
 Identities = 82/147 (55%), Positives = 106/147 (72%)
 Frame = +1

Query: 85  ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 264
           E+TFI VKPD VQRGL+G II +FE KG+KL  LKF+ PS +L+++HY++   +PF+  L
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKL 63

Query: 265 VKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPTDSQPGTIRGDLCIQVGRNIIHGSDSVE 444
           V +M+SGPV  M+WEG   VKTGR MLGA+NP DS PGTIRGD  I +GRN+ HGSDS+E
Sbjct: 64  VGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIE 123

Query: 445 SAKKXIGLWFTDKEVVGWTPANENXVY 525
           SA + I LWF   E+  +    E  +Y
Sbjct: 124 SANREIKLWFQPSEIQVYDRTIEPWIY 150


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = -2

Query: 215 RSSSDGHTNFKPTSLKPFFSKRSIMVPTRPRCTPSGLTIIKVRSRCSAIMKYYXRAQLTT 36
           R  S  + N +   L P      +   T+P+   S +T+ ++R R +++++Y    Q+  
Sbjct: 322 RGKSSSNDNHRIPQLHP--DGTFVETITKPKGLHSRITMTEMRRRVASMLEYIGHIQVEM 379

Query: 35  RAPQPGN 15
            A   GN
Sbjct: 380 AAQSAGN 386


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = -1

Query: 216 EKFF*WPYE--FQTD*FEAFLFETFNNGAHKTTLYTIRLNHNKSTLTLFRHHEILLTCSI 43
           ++F  W Y+  ++ D     L ET N    K    T+RL H    L+LF    +L TC +
Sbjct: 283 DQFTDWLYQRWYEKDKLIDTLLETGNFPGPKKLHTTVRLKHRLEILSLF---SVLFTCIV 339


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 170 KPFFSKRSIMVPTRPRCTPSGLT 102
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
 Frame = +1

Query: 262 LVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPTDSQP--GTIRGDLCIQVGR--NIIH 426
           L++     P++  V  GL +++ G ++   T+P+      GT+ GD C+++G   NI+H
Sbjct: 349 LLRLKDKHPLIVDV-RGLGLLQ-GIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVH 405


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 108 LNHNKSTLTLFRHHEILLTCSINYTCTTAW 19
           L+H K+T++L  +++      +N+TC   W
Sbjct: 816 LSHMKATISLEGYNDCSEFTGVNFTCEVDW 845


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 359 GLVAPSI*RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 243
           G + P   RP  T+L P  T+ TT   +    RP  K +
Sbjct: 359 GSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSK 397


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 173 LKPFFSKRSIMVPTRPRCTPSGLTIIKVRSRCSAIMKYY 57
           ++P+F K + +    P+      T + V+SRC  +  YY
Sbjct: 161 VRPYFYKHADLKQLCPKWNQYLETCVLVQSRCFYVNSYY 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,378
Number of Sequences: 5004
Number of extensions: 40167
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)