Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_F04
(566 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 204 9e-54
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 204 9e-54
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 52 8e-08
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 5.9
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 25 7.7
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox... 25 7.7
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 7.7
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 25 7.7
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 204 bits (497), Expect = 9e-54
Identities = 94/140 (67%), Positives = 117/140 (83%)
Frame = +2
Query: 50 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 229
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 230 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 409
DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K L+ YDR+LLVADPRR
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120
Query: 410 CEPKKFGGPGARARYQKSYR 469
EPKKFGG GARAR QKSYR
Sbjct: 121 MEPKKFGGHGARARQQKSYR 140
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 204 bits (497), Expect = 9e-54
Identities = 94/140 (67%), Positives = 117/140 (83%)
Frame = +2
Query: 50 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 229
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 230 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 409
DIRV V GGGHV+Q+YAIRQAISKA++A+YQK+VDE SK E+K L+ YDR+LLVADPRR
Sbjct: 61 DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120
Query: 410 CEPKKFGGPGARARYQKSYR 469
EPKKFGG GARAR QKSYR
Sbjct: 121 MEPKKFGGHGARARQQKSYR 140
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 51.6 bits (118), Expect = 8e-08
Identities = 41/128 (32%), Positives = 60/128 (46%)
Frame = +2
Query: 71 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVK 250
G++K++ A G G VNG P D+ R++ K L + + ++ TV
Sbjct: 12 GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70
Query: 251 GGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFG 430
GGG Q A+ AISK+LI + E S K+ V D ++ D R+ E KK G
Sbjct: 71 GGGPTGQSGAVHAAISKSLI------LQEPSLKQ-----VIKDTHCVLNDKRKVERKKTG 119
Query: 431 GPGARARY 454
P AR +Y
Sbjct: 120 QPKARKKY 127
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 190 TYPFARQGKILYGRHQSDSQGWWSCSTSLRYQTSYFKGPDCLLSEI 327
T F+R GKI++ +S G W TS + Q P+C E+
Sbjct: 984 TISFSRSGKIIFKSTRSKLHGIWH-ETSYKMQ-EIRDNPECARQEM 1027
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 289 LSDSVNLCYMTTTLDCHSDV-DHREFFLAEQ 200
LS+ N CYM + L C + + R+FF +++
Sbjct: 313 LSNLGNTCYMNSALQCLTHTRELRDFFTSDE 343
>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
Etp1/ cytochrome oxidase cofactor Cox15,
fusion|Schizosaccharomyces pombe|chr 1|||Manual
Length = 631
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 6 SLSKWLLCRRQDVSPSRPSKYSDVRKPPP 92
S+S +L +++ RPS +S+++KP P
Sbjct: 487 SISSSILTQQRQFHTFRPSFHSEIKKPLP 515
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 137 RLHAAFHDHACNTQLRWRFS 78
RLH+ F++H C + L+ FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 450 DTRNLTVKPSTKPSGGIVAASCCH 521
D N+ VKP+ P+ + CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,487,013
Number of Sequences: 5004
Number of extensions: 49549
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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