Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_F04
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 225 1e-59
Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z11115-14|CAC42391.1| 644|Caenorhabditis elegans Hypothetical p... 28 4.1
Z11115-13|CAA77454.2| 642|Caenorhabditis elegans Hypothetical p... 28 4.1
U23525-10|AAC46571.2| 503|Caenorhabditis elegans Hypothetical p... 28 4.1
U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical pr... 28 4.1
AF269694-1|AAF76193.1| 642|Caenorhabditis elegans LIN-9S protein. 28 4.1
AF269693-1|AAF76192.1| 644|Caenorhabditis elegans LIN-9L protein. 28 4.1
Z68341-1|CAA92764.1| 258|Caenorhabditis elegans Hypothetical pr... 28 5.4
L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical pr... 28 5.4
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 27 7.1
U41991-8|AAA83348.2| 500|Caenorhabditis elegans Hypothetical pr... 27 7.1
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 27 7.1
Z81113-2|CAB03279.1| 510|Caenorhabditis elegans Hypothetical pr... 27 9.4
AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical ... 27 9.4
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 225 bits (551), Expect = 1e-59
Identities = 99/140 (70%), Positives = 125/140 (89%)
Frame = +2
Query: 50 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 229
+Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F V
Sbjct: 5 VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64
Query: 230 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 409
DIR+ V GGGHVAQ+YA+RQA++KAL+A+Y KYVDE SK+E+K+I YD+SLLVADPRR
Sbjct: 65 DIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRR 124
Query: 410 CEPKKFGGPGARARYQKSYR 469
E KKFGGPGARARYQKSYR
Sbjct: 125 RESKKFGGPGARARYQKSYR 144
>Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical
protein BE10.4 protein.
Length = 301
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 326 YVDEASKKEIKDILVQYDRSLLVADPRRCE 415
+ DE +KE+ D+ QYDRS+ + D R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180
>Z11115-14|CAC42391.1| 644|Caenorhabditis elegans Hypothetical
protein ZK637.7b protein.
Length = 644
Score = 28.3 bits (60), Expect = 4.1
Identities = 29/107 (27%), Positives = 53/107 (49%)
Frame = +2
Query: 53 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 232
+AV+ ++ V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 538 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 592
Query: 233 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 373
++ G +++ IR AI +AF+Q YV E K+ I+++
Sbjct: 593 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 632
>Z11115-13|CAA77454.2| 642|Caenorhabditis elegans Hypothetical
protein ZK637.7a protein.
Length = 642
Score = 28.3 bits (60), Expect = 4.1
Identities = 29/107 (27%), Positives = 53/107 (49%)
Frame = +2
Query: 53 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 232
+AV+ ++ V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 536 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 590
Query: 233 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 373
++ G +++ IR AI +AF+Q YV E K+ I+++
Sbjct: 591 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 630
>U23525-10|AAC46571.2| 503|Caenorhabditis elegans Hypothetical
protein K11G12.6a protein.
Length = 503
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +1
Query: 199 FARQGKILYGRHQSDSQGWWSCSTSLRYQTSYFKGPDCLLSEICRRSL 342
FAR +Y + WW+ S Y ++ KG D LL+ + +
Sbjct: 399 FARAKLYMYHFTDIGDKNWWTRSFQEEYMPTFNKGNDALLNYLTEHKI 446
>U23525-9|ABC71820.1| 766|Caenorhabditis elegans Hypothetical
protein K11G12.6b protein.
Length = 766
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +1
Query: 199 FARQGKILYGRHQSDSQGWWSCSTSLRYQTSYFKGPDCLLSEICRRSL 342
FAR +Y + WW+ S Y ++ KG D LL+ + +
Sbjct: 662 FARAKLYMYHFTDIGDKNWWTRSFQEEYMPTFNKGNDALLNYLTEHKI 709
>AF269694-1|AAF76193.1| 642|Caenorhabditis elegans LIN-9S protein.
Length = 642
Score = 28.3 bits (60), Expect = 4.1
Identities = 29/107 (27%), Positives = 53/107 (49%)
Frame = +2
Query: 53 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 232
+AV+ ++ V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 536 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 590
Query: 233 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 373
++ G +++ IR AI +AF+Q YV E K+ I+++
Sbjct: 591 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 630
>AF269693-1|AAF76192.1| 644|Caenorhabditis elegans LIN-9L protein.
Length = 644
Score = 28.3 bits (60), Expect = 4.1
Identities = 29/107 (27%), Positives = 53/107 (49%)
Frame = +2
Query: 53 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVD 232
+AV+ ++ V +C +G + V+ L L++ L LQ + +G +K S VD
Sbjct: 538 EAVRQMCSQQAGRFVEHCNQGLNVENVHA--LTLIQS-LTAVLLQ--VRTMGTQKISAVD 592
Query: 233 IRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 373
++ G +++ IR AI +AF+Q YV E K+ I+++
Sbjct: 593 LQSL---GDAISE---IRTAIHPRNVAFFQDYV-EVHMKQFHTIMLE 632
>Z68341-1|CAA92764.1| 258|Caenorhabditis elegans Hypothetical
protein F01G4.2 protein.
Length = 258
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 163 QTAAVQTSGTYPFARQGKILYGRHQSDSQG 252
QT V GT+ R G L G H+ D+ G
Sbjct: 113 QTIDVNVLGTFNVIRHGVALMGEHEKDANG 142
>L11247-4|AAK84520.1| 392|Caenorhabditis elegans Hypothetical
protein F09G8.3 protein.
Length = 392
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 386 LLVADPRRCEPKKFGGPGARARY 454
LL DPR+ E K PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 259 TTTLDCHSDVDHREFFLAEQKD-RF--LKFVLQQSG 161
TT LDC + H EF+ AE D RF + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181
>U41991-8|AAA83348.2| 500|Caenorhabditis elegans Hypothetical
protein C42D4.2 protein.
Length = 500
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +2
Query: 254 GGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPK 421
GG VA + + ++ L + +Q+Y+ +S + +Q +R+ A+ C PK
Sbjct: 129 GGTVASMLSFSTKVNTDL-SLFQQYISMSSPTNFDTLELQVERTYRFAEHANCLPK 183
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 259 TTTLDCHSDVDHREFFLAEQKD-RF--LKFVLQQSG 161
TT LDC + H EF+ AE D RF + F+ +Q G
Sbjct: 21 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56
>Z81113-2|CAB03279.1| 510|Caenorhabditis elegans Hypothetical
protein T03F6.2 protein.
Length = 510
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 319 IEGNQGL*NSLSDSVNLCYMTTTLDCHSDV 230
+EG G + + D N+ ++TT+ CH +V
Sbjct: 3 VEGQIGRVDDVKDDFNVILVSTTMKCHYEV 32
>AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical
protein H24K24.4 protein.
Length = 603
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 474 PSTKPSGGIVAASCCHCDIIGWCTIKNIK 560
P+ + G I+ CC IG C +KNI+
Sbjct: 430 PAPEDPGTILLDICCGTGTIGQCLLKNIQ 458
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,147,452
Number of Sequences: 27780
Number of extensions: 293046
Number of successful extensions: 752
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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