Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_F01
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0773 + 20474642-20475835                                         29   3.3  
10_02_0148 - 5859664-5859828,5859916-5860043,5860310-5860451,586...    28   5.8  

>10_08_0773 + 20474642-20475835
          Length = 397

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 481 VSCLGILQEENWSECFNMVKETLEKKRYECST 576
           VS LG LQ+EN    +++ KETL  +  +CS+
Sbjct: 364 VSVLGSLQQENVHFLYDLKKETLSFEPADCSS 395


>10_02_0148 -
           5859664-5859828,5859916-5860043,5860310-5860451,
           5860548-5860643,5860836-5860976,5861799-5861973,
           5862416-5862702,5862777-5862870,5863244-5863335,
           5863459-5863553,5863648-5863759
          Length = 508

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = -2

Query: 665 SYNLKGITQV*DYGLSRNNVAIGAESAHAKVEHS*RFFSKVSLTILKHSDQFSSWSIPKQ 486
           SY +  I  V      + ++ +  E  H  V++  +  S+ ++   KH+D  S  SI ++
Sbjct: 205 SYGISTIFSVIPAFCKKGDIIVADEGVHWAVQNGLQL-SRSTVVYFKHNDMASLASILEK 263

Query: 485 LTH 477
           LTH
Sbjct: 264 LTH 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,968,017
Number of Sequences: 37544
Number of extensions: 217267
Number of successful extensions: 428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)