Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_E24
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.09c |nut2|med10|mediator complex subunit Med10|Schizos...    52   1e-07
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    27   1.8  
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    27   3.1  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    26   4.1  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    26   5.5  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    25   7.2  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    25   9.5  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   9.5  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.5  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    25   9.5  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   9.5  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     25   9.5  

>SPBC31F10.09c |nut2|med10|mediator complex subunit
           Med10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 22/95 (23%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
 Frame = +1

Query: 247 VIFNLRXQS---VLNQKIQSLVTGLQEIDKLKSQVHDIHVPTEVFDYIDQGRNPQLYTKD 417
           +++NL   +    + + + +L+  L+ +  +  +V+++ +P +V +YI+QGRNP +Y + 
Sbjct: 25  IVYNLEDTTPSDAIPESLDTLIRDLKSLPDISRKVNNL-IPQDVLEYIEQGRNPDVYARQ 83

Query: 418 CIDKALAKNEEVKGKIDSYKRFKTHLLSELSKTFP 522
             +     N+ V GK+ + + F+     E+ + +P
Sbjct: 84  FSELVQKDNQYVNGKLYAIEGFQKAFAEEIKQAYP 118


>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 570

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/62 (25%), Positives = 33/62 (53%)
 Frame = +1

Query: 355 VPTEVFDYIDQGRNPQLYTKDCIDKALAKNEEVKGKIDSYKRFKTHLLSELSKTFPNEIT 534
           V +E+ + I++ +NP +    C+ +     +E +  ID+   F T+ ++ + KT  NE +
Sbjct: 204 VVSEILELIEKSKNPSILVDACVSR-FHIQQETQDFIDA-THFPTY-VTPMGKTAINESS 260

Query: 535 KY 540
            Y
Sbjct: 261 PY 262


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +1

Query: 271 SVLNQKIQSLVTGLQEIDKLKSQVHDIHVPTEVFDYID-QGRNPQLYTK 414
           S L Q+IQS V+G+QE ++ K   H   V  ++ + +  + RNP+  T+
Sbjct: 51  SELIQRIQSQVSGIQEFEE-KLNEHGYRVGQKLVELVVWRERNPKRETR 98


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 415 DCIDKALAKNEEVKGKIDSYK 477
           DC+D  + +NE+VK  +  YK
Sbjct: 23  DCLDNGVEENEQVKNLLKLYK 43


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 295 SLVTGLQEIDKLKSQVHDIHVPTEVFDYIDQGRNPQLYTKDCIDKALAK 441
           S++  L  +DK+K  +HD    T+ FD   + R P +  K  +   L++
Sbjct: 150 SILNSLDNLDKVKYLLHDSSSLTKAFDSYKEKR-PSIVEKFPLHNLLSR 197


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +1

Query: 367 VFDYIDQGRNPQLYTKDCIDKALAKNEEVKGKIDSYKR 480
           VFD+        + T  C+D  + +N++ +   D+ KR
Sbjct: 189 VFDFRSYNIKATVRTISCVDLLIGENQDAENTADTSKR 226


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 415  DCIDKALAKNEEVKGKIDSYKRFKTHLLSELSKTF 519
            D ++  L +  EV+  + +Y+R K H+++EL K F
Sbjct: 1042 DSVEDILTEFYEVR--LRTYQRRKEHMVNELEKRF 1074


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 347  ISMYQQKSLITLIKAVTHSSTQRTA*IKHWLKMK 448
            ++ +  K  +T+        TQ+ A +KHW+K K
Sbjct: 1039 LTTHATKDNLTVKDCFPKDDTQQLAAVKHWIKEK 1072


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 352 HVPTEVFDYIDQGRNPQLYTKDCID-KALAKNEEV-KGKIDSYKRFKT 489
           H P  +F  I+   N   YT D +D  AL +N  + K  + S + F+T
Sbjct: 200 HSPLVMFQAINPYLNNNYYTHDTVDTNALEENSWITKLDMQSLQHFRT 247


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 433 MLYLCSPLCRAVGYGLDQCNQRLLLVHGYRELVTSICQSP 314
           +L  CS       + L   NQRL  + G+ ++VT I  SP
Sbjct: 296 ILATCSTDKTIALWDLRNLNQRLHTLEGHEDIVTKISFSP 335


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 370 FDYIDQGRNPQLYTKDCIDKALAKNEEVKGK 462
           ++Y  +G+  ++Y +  ID   + NEE KGK
Sbjct: 599 WEYRMEGQFLEIYNETIIDLLASGNEEEKGK 629


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 99  INKEF*NGVPLFYNSL*ISIKNSMSSPLXNLETQLEMFIEN 221
           IN +  N +  ++N L   I+   S    N+ETQ++ F+E+
Sbjct: 256 INWDIENAIQKYFNPL---IEQLASLAKLNIETQIQYFVED 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,444
Number of Sequences: 5004
Number of extensions: 43686
Number of successful extensions: 133
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)