Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_E21
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c... 28 1.0
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 2.3
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 27 3.1
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 26 4.1
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 26 5.4
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra... 26 5.4
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.2
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 25 7.2
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.5
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 25 9.5
>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 716
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 205 YGVWYRLNTDRNFRLYMFKNHNWVLEAYYGL-GEKI 309
YG W + T +F +Y W++E YG+ GE++
Sbjct: 280 YGGWDGVKTFSDFWIYNVDKDLWIMENEYGIPGERV 315
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 574 VGSFFKLFYVCLESFLASVFFE 509
VGS+F LF C+ L S+FF+
Sbjct: 258 VGSWFMLFAWCIYGILLSIFFK 279
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +1
Query: 1 DXVINFCKKCNQGLVSLIRNFHKRS*HFLLCN---LSIMLKKEPKPI 132
D V+ C +CN R H R ++C L I L + P+P+
Sbjct: 275 DSVVQICPECNNSFTLTRRRRHCRLCGRVICRFCVLEISLPQHPQPL 321
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 164 FREVLIKFLNVIGFGSFFNIIDRLQSKK 81
FRE F+N S N IDR++ KK
Sbjct: 446 FREKNCAFVNFTSLASAINAIDRIKQKK 473
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 425 PESGSYSNTHLTSPINPGAYSLPSPSHTF 339
P S S S+ +T P +P A S+ H+F
Sbjct: 581 PSSTSRSSVKITGPSSPNARSMAYEQHSF 609
>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
3-phosphatidyltransferase Pis1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +1
Query: 259 KNHNWVLEAYYG 294
K HNW+L YYG
Sbjct: 144 KKHNWMLRLYYG 155
>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 191
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +1
Query: 244 RLYMFKNHNWVLEA----YYGLGEKIADQKTRQLDL 339
+L+++ + W+L+ Y L EK D+K QLDL
Sbjct: 106 KLWLWSSRFWLLDTLLTIYQLLREKTEDEKEHQLDL 141
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 250 YMFKNHNWVLEAYYGLGEKIADQKTRQLDLKVWDGE 357
Y+ K H + A LGE I + +K+W+GE
Sbjct: 131 YVLKGHQSSVWAVLALGEDIFITGSADKLIKIWNGE 166
>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 483 ELLKKFDEHSKNTDARKL 536
++LKK DEHS++ AR +
Sbjct: 383 QMLKKADEHSRSIQARSM 400
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 465 LVKPDDELLKKFDEHSKNTDARKLSKQT--*NNLKKLPTKIRIEPKDTSIVEKMNDKHSV 638
++K DD + K E K A+KLS+Q LKK ++++ ++ E+ +K
Sbjct: 174 MLKSDDHMEKVRQELIKEATAKKLSQQAKKQRELKKFGKQVQLAKQE----ERQREKKET 229
Query: 639 LXRL 650
L ++
Sbjct: 230 LEKI 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,591
Number of Sequences: 5004
Number of extensions: 51911
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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