Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_E21
         (651 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134239-1|AAD43051.1| 1057|Drosophila melanogaster Recq helicas...    29   5.5  
AE014134-358|AAF51289.1|   77|Drosophila melanogaster CG15386-PA...    29   5.5  
AY058252-1|AAL13481.1|  561|Drosophila melanogaster GH01404p pro...    29   7.2  
AE014296-2400|AAN11801.1| 1058|Drosophila melanogaster CG4879-PB...    29   7.2  
AB031087-1|BAA88313.1| 1058|Drosophila melanogaster DNA helicase...    29   7.2  
AY058312-1|AAL13541.1|  584|Drosophila melanogaster GH07323p pro...    28   9.6  
AE014297-3247|AAF56078.2|  584|Drosophila melanogaster CG31052-P...    28   9.6  

>AF134239-1|AAD43051.1| 1057|Drosophila melanogaster Recq helicase 5
            protein.
          Length = 1057

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +3

Query: 477  DDELLKKFDEHSKNTDA-RKLSKQT*NNLKKLPTKIRIEPKDTSIVEKMNDKHSV 638
            ++EL  K +E  K+  + RK SK++ +NLKK  +  R+  KDT   EK + K  V
Sbjct: 932  NNELQHKQEEDRKDKASHRKTSKESLSNLKKEGSDSRVLQKDTK-PEKNHQKTDV 985


>AE014134-358|AAF51289.1|   77|Drosophila melanogaster CG15386-PA
           protein.
          Length = 77

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 411 RATFWVVTFGTIGYALFTLVKPDDELLKKFDEHSKNT 521
           ++  W++ FG +GY L  L +P+ + L++      +T
Sbjct: 8   KSVLWLIGFGGMGYGLMVLTEPNVDKLERIKASVSST 44


>AY058252-1|AAL13481.1|  561|Drosophila melanogaster GH01404p
           protein.
          Length = 561

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 477 DDELLKKFDEHSKNTDA-RKLSKQT*NNLKKLPTKIRIEPKDTSIVEKMNDKHSV 638
           ++EL  K +E  K+  + RK SK++ +NLKK  +  R+  KDT    + + K  V
Sbjct: 435 NNELQHKQEEDRKDKASHRKTSKESLSNLKKEGSDSRVLQKDTKPETRNHQKTDV 489


>AE014296-2400|AAN11801.1| 1058|Drosophila melanogaster CG4879-PB,
            isoform B protein.
          Length = 1058

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 477  DDELLKKFDEHSKNTDA-RKLSKQT*NNLKKLPTKIRIEPKDTSIVEKMNDKHSV 638
            ++EL  K +E  K+  + RK SK++ +NLKK  +  R+  KDT    + + K  V
Sbjct: 932  NNELQHKQEEDRKDKASHRKTSKESLSNLKKEGSDSRVLQKDTKPETRNHQKTDV 986


>AB031087-1|BAA88313.1| 1058|Drosophila melanogaster DNA helicase
            RECQE protein.
          Length = 1058

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 477  DDELLKKFDEHSKNTDA-RKLSKQT*NNLKKLPTKIRIEPKDTSIVEKMNDKHSV 638
            ++EL  K +E  K+  + RK SK++ +NLKK  +  R+  KDT    + + K  V
Sbjct: 932  NNELQHKQEEDRKDKASHRKTSKESLSNLKKEGSDSRVLQKDTKPETRNHQKTDV 986


>AY058312-1|AAL13541.1|  584|Drosophila melanogaster GH07323p
           protein.
          Length = 584

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -3

Query: 604 LVSFGSILILVGSFFKLFYVCLESF 530
           ++ +G++L+LVGS F+L +  L ++
Sbjct: 453 VIGYGALLVLVGSLFRLAFAYLSTY 477


>AE014297-3247|AAF56078.2|  584|Drosophila melanogaster CG31052-PA
           protein.
          Length = 584

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -3

Query: 604 LVSFGSILILVGSFFKLFYVCLESF 530
           ++ +G++L+LVGS F+L +  L ++
Sbjct: 453 VIGYGALLVLVGSLFRLAFAYLSTY 477


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,234,783
Number of Sequences: 53049
Number of extensions: 524574
Number of successful extensions: 1203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)