Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_E18
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...   101   4e-23
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...    63   2e-11
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    56   3e-09
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    54   1e-08
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    52   3e-08
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc...    52   6e-08
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    46   3e-06
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.1  
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    25   4.4  

>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score =  101 bits (243), Expect = 4e-23
 Identities = 46/70 (65%), Positives = 60/70 (85%)
 Frame = +3

Query: 144 TTIFSPEGRLYQVEYAMEAXTHAGTSLGIXATDGILLAAERRNTNKLLDEVFSSEKIYXL 323
           TTIFSPEGRLYQVEYA+EA  HAG +LGI A DGI+LAAE++ T+KLL++  S+EK+Y +
Sbjct: 9   TTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHI 68

Query: 324 NDDMVCSVAG 353
            D+M+C+VAG
Sbjct: 69  GDNMLCAVAG 78



 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = +1

Query: 352 GITSDANVXTNEXRLIAXRYLLQYGESIPCEQXVSWLCDV 471
           G+T+DAN+  N  R +  +YL  + E +PCEQ V  +CD+
Sbjct: 78  GLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDL 117


>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 62.9 bits (146), Expect = 2e-11
 Identities = 28/67 (41%), Positives = 46/67 (68%)
 Frame = +3

Query: 153 FSPEGRLYQVEYAMEAXTHAGTSLGIXATDGILLAAERRNTNKLLDEVFSSEKIYXLNDD 332
           FSPEGRL+QVEYA+EA     T++G+   D ++L  E+R T+ L+ E  S EK++ ++  
Sbjct: 15  FSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLM-ESHSVEKLFEIDSH 73

Query: 333 MVCSVAG 353
           + C+++G
Sbjct: 74  IGCAISG 80


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 56.0 bits (129), Expect = 3e-09
 Identities = 28/63 (44%), Positives = 41/63 (65%)
 Frame = +3

Query: 147 TIFSPEGRLYQVEYAMEAXTHAGTSLGIXATDGILLAAERRNTNKLLDEVFSSEKIYXLN 326
           T FSP G+L Q+EYA+ A     TS+GI ATDG++LA E++ T++L     S EK+  + 
Sbjct: 10  TTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGA-SLEKVCAIT 68

Query: 327 DDM 335
            D+
Sbjct: 69  PDI 71


>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 53.6 bits (123), Expect = 1e-08
 Identities = 24/45 (53%), Positives = 33/45 (73%)
 Frame = +3

Query: 153 FSPEGRLYQVEYAMEAXTHAGTSLGIXATDGILLAAERRNTNKLL 287
           FSP+GRL+Q EYA +A  +A T +GI   DG++LA E+  T+KLL
Sbjct: 14  FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLL 58


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 52.4 bits (120), Expect = 3e-08
 Identities = 26/73 (35%), Positives = 43/73 (58%)
 Frame = +3

Query: 141 ATTIFSPEGRLYQVEYAMEAXTHAGTSLGIXATDGILLAAERRNTNKLLDEVFSSEKIYX 320
           A ++FSP+GRL QVEY  EA     T++ +   + I++  ER+N  K L  V + +KI  
Sbjct: 7   ALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPK-LQNVSNFQKIAM 65

Query: 321 LNDDMVCSVAGYN 359
           +++ +  + AG N
Sbjct: 66  VDNHVCLAFAGLN 78


>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 51.6 bits (118), Expect = 6e-08
 Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
 Frame = +3

Query: 147 TIFSPEGRLYQVEYAMEAXTHAG-TSLGIXATDGILLAAERRNTNKLLDEVFSSEKIYXL 323
           T+FSPEGRLYQVEYA +A  +AG TS+G+   +   + ++++  +KL+D   + + ++ +
Sbjct: 12  TVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLID-ASTVKHVFPI 70

Query: 324 NDDMVCSVAG 353
              + C + G
Sbjct: 71  TKGIGCVMTG 80


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 46.0 bits (104), Expect = 3e-06
 Identities = 23/69 (33%), Positives = 41/69 (59%)
 Frame = +3

Query: 147 TIFSPEGRLYQVEYAMEAXTHAGTSLGIXATDGILLAAERRNTNKLLDEVFSSEKIYXLN 326
           T +SP+GRL+QVEYA+EA      ++G+ +    +L A +RN  +L       +K+  ++
Sbjct: 11  TTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSS---YQKKLIRID 67

Query: 327 DDMVCSVAG 353
           D +  ++AG
Sbjct: 68  DHIGIAIAG 76


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +3

Query: 105  YL*RKWHDVMIPATTIFSPEGRLYQVEYAMEAXTHAGTSLGIXATDGILLAAE 263
            Y+   W+DV+    TI SP+  + ++++  +   H     GI + D I LA++
Sbjct: 3758 YIPNVWNDVLKKLITILSPKVIITKLDFERDTFVH---EFGIDSIDLIWLASK 3807


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/50 (22%), Positives = 24/50 (48%)
 Frame = +3

Query: 207 HAGTSLGIXATDGILLAAERRNTNKLLDEVFSSEKIYXLNDDMVCSVAGY 356
           + GT++ I      +LA + R+ N          +++ + DD+V   +G+
Sbjct: 12  NGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGF 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,731,640
Number of Sequences: 5004
Number of extensions: 31126
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)