Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_E15
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual      38   0.002
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    25   9.6  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    25   9.6  

>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
 Frame = +2

Query: 317 FKMMWEQHPNFGRNSILW-EEWWRQVVKLTLQDHLPEGADTRSLGNTLINDFKTSKCWDV 493
           FK   E+H N G+ S L   +WW +V++ +    +P       +   L + F     + +
Sbjct: 53  FKDFSEKHKNHGKKSGLNPHDWWIKVIEHSFPTPVPA-----EMAEELWSYFSKKTGYTI 107

Query: 494 -AAGSDTLLQXXXXXXXXXXXXSNSDPRLYDILQNLGLSKYFDFILTSYDCGFSK 655
                D L +            SN+D R+  +L++ G+    D    SYD GF K
Sbjct: 108 HPLLIDFLKRNKEERKYIIGIISNTDERIRTVLEDYGIDHLIDIYAFSYDVGFEK 162



 Score = 29.1 bits (62), Expect = 0.59
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 178 IRLVTFDATNTLLKFKMVPSQYYTKIARTYG 270
           I+LVTFDA  T+L         Y+++A+ YG
Sbjct: 10  IKLVTFDAFGTILHLSKPVPIVYSEVAQKYG 40


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 592 LKNIVKTRV*IRNHSYSYPLLFYYLQQCIASSC 494
           +KNI+  R  I+NH Y  P +   +++ +   C
Sbjct: 20  VKNILGDRFEIKNHDYDLPEIQGSVKEVVLEKC 52


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -2

Query: 122 K*KLISRTGNKTREN*RFILNNYYILCRYYYVDLILNDN 6
           K KL  R   K   N R  LN YY+    YYV  +L  N
Sbjct: 236 KGKLFQRP-EKDEPNYRRKLNKYYLKVTSYYVQRVLGLN 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,494
Number of Sequences: 5004
Number of extensions: 52248
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)