Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_E14
(486 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 70 2e-13
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 68 7e-13
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 64 8e-12
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 31 0.092
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 30 0.16
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.37
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 28 0.86
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 2.6
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 26 2.6
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.5
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 4.6
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 25 4.6
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 25 8.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.0
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 8.0
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 70.1 bits (164), Expect = 2e-13
Identities = 30/62 (48%), Positives = 49/62 (79%)
Frame = +3
Query: 99 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLICXPRDR*EAVV 278
YLL +GGK +P+A+D+E +LS+VGIEA+AE+++ +I+ELNGK++E+LI ++ V
Sbjct: 7 YLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVP 66
Query: 279 NA 284
+A
Sbjct: 67 SA 68
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 68.1 bits (159), Expect = 7e-13
Identities = 27/55 (49%), Positives = 45/55 (81%)
Frame = +3
Query: 99 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLICXPRDR 263
YLL +GGK +P+A+D+E +LS+VGIEA++E+++ +I ELNGKD+++LI ++
Sbjct: 7 YLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEK 61
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 64.5 bits (150), Expect = 8e-12
Identities = 25/55 (45%), Positives = 45/55 (81%)
Frame = +3
Query: 99 YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLICXPRDR 263
YLL +GGK +P+A+D+E +LS+VGIE+++E+++ +I EL+GKD+++LI ++
Sbjct: 7 YLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEK 61
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 31.1 bits (67), Expect = 0.092
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Frame = -3
Query: 277 TTASHRSRGXQISCSTSLPLSSVITFLSFSASA---SIPTELRIFSTSAAAGVVLPPSTA 107
+++S+RSRG + S+ S++ LSFS++ S+P++L+ F+ +++ + P TA
Sbjct: 105 SSSSNRSRGGPYT--PSIRDDSLLALLSFSSNHRLHSMPSQLQPFNNASSYTTPMAPFTA 162
Query: 106 SKYRGHVTHFLSP 68
S + V+H P
Sbjct: 163 S-FSNKVSHSAYP 174
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 30.3 bits (65), Expect = 0.16
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = -3
Query: 268 SHRSRGXQISCSTSLPLSSVITFLSFSASASIPT---ELRIFSTSAAAGVVLPPSTASKY 98
S S+ +S ST + L LSF S E+ S S V L P +A KY
Sbjct: 388 SVNSKAKMMSISTPMALGMNRGVLSFERSIEKRKNDYEVTGQSLSFVDDVSLTPDSAPKY 447
Query: 97 RGHVTHFLSPN*HETCN 47
GHV L+ ETC+
Sbjct: 448 AGHVVAVLNRPSGETCS 464
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.1 bits (62), Expect = 0.37
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = -3
Query: 217 SSVITFLSFSASASIP--TELRIFSTSAAAGVVLPPSTAS 104
SSV T LS SAS+SIP + STS ++ V+P S++S
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSS 47
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.9 bits (59), Expect = 0.86
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 232 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKY 98
+ L + S T +S S+ S+PT+ + T + + V PPS S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.2 bits (55), Expect = 2.6
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 244 ISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 104
+S S+ L S++ T S +AS+PT I S S P+T+S
Sbjct: 80 LSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.2 bits (55), Expect = 2.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 147 VEKILSSVGIEADAEKLKKVITELNG 224
V++I VG+E D+E K + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 3.5
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 423 TKLYKSTRRWSLFQFXF 473
TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 4.6
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -3
Query: 232 TSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTA 107
T LP ++V T SFS SAS T +++ +V PPST+
Sbjct: 37 TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTS 76
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 4.6
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -3
Query: 169 TELRIFSTSAAAGVVLPPSTASKYRGHVTHFL 74
T + S G VLPP + + GH F+
Sbjct: 75 TATHVHGASGFEGAVLPPPSRKENEGHAVDFI 106
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 24.6 bits (51), Expect = 8.0
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -3
Query: 283 ALTTASHRSRGXQISCSTSLPLSSVITFLSFSASASIPTELRI--FSTSAAAGVV 125
A+ ++ S +I+C+ S P S TF +F +SA + E R+ FSTS G V
Sbjct: 48 AVGSSYFESEKIKIACTVSGPRPSK-TF-AFRSSAKLNCEFRLSPFSTSVRQGHV 100
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect = 8.0
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = -3
Query: 274 TASHRSRGXQISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTASKYR 95
T+++R+ + STS+ SS T S ++ AS + T++++ V PP T S
Sbjct: 642 TSTNRT-STTFTSSTSISTSSSSTATSSTSFASESSSFYSNVTTSSSTVSTPPPTTSFPS 700
Query: 94 GHVTHFLS 71
T F++
Sbjct: 701 TFTTSFIT 708
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 24.6 bits (51), Expect = 8.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 263 PVPGPANKLFNILAVELSDYFLKLL 189
P P P K F A LS +FL L+
Sbjct: 54 PAPEPPKKKFGYYARRLSGHFLSLI 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,420,087
Number of Sequences: 5004
Number of extensions: 20949
Number of successful extensions: 98
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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