Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_E14
         (486 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X05016-1|CAA28672.1|  113|Drosophila melanogaster r-protein prot...    73   2e-13
AE013599-2313|AAS64838.1|  113|Drosophila melanogaster CG4918-PB...    73   2e-13
AE013599-2312|AAF57979.1|  113|Drosophila melanogaster CG4918-PA...    73   2e-13
X05466-1|CAA29026.1|  113|Drosophila melanogaster r ribosomal pr...    73   3e-13
AY119253-1|AAM51113.1|  113|Drosophila melanogaster SD22208p pro...    73   3e-13
Z29361-1|CAA82545.1|  644|Drosophila melanogaster BTD protein.         30   1.9  
AE014298-1363|AAF46518.1|  644|Drosophila melanogaster CG12653-P...    30   1.9  
M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair pro...    29   3.4  
BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p pro...    29   3.4  
AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p pro...    29   3.4  
AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA...    29   3.4  
AY058297-1|AAL13526.1|  543|Drosophila melanogaster GH05942p pro...    29   4.5  
AE014296-1660|AAF50267.2|  543|Drosophila melanogaster CG3529-PB...    29   4.5  
AY084183-1|AAL89921.1|  315|Drosophila melanogaster RE62247p pro...    28   7.8  
AE014298-1439|AAF46576.2|  313|Drosophila melanogaster CG15307-P...    28   7.8  

>X05016-1|CAA28672.1|  113|Drosophila melanogaster r-protein
           protein.
          Length = 113

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 35/55 (63%), Positives = 44/55 (80%)
 Frame = +3

Query: 99  YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLICXPRDR 263
           YLLAVLGGK +PA +D+EKILSSVG+E DAE+L KVI EL GK ++ LI   R++
Sbjct: 7   YLLAVLGGKDSPANSDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREK 61


>AE013599-2313|AAS64838.1|  113|Drosophila melanogaster CG4918-PB,
           isoform B protein.
          Length = 113

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 35/55 (63%), Positives = 44/55 (80%)
 Frame = +3

Query: 99  YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLICXPRDR 263
           YLLAVLGGK +PA +D+EKILSSVG+E DAE+L KVI EL GK ++ LI   R++
Sbjct: 7   YLLAVLGGKDSPANSDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREK 61


>AE013599-2312|AAF57979.1|  113|Drosophila melanogaster CG4918-PA,
           isoform A protein.
          Length = 113

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 35/55 (63%), Positives = 44/55 (80%)
 Frame = +3

Query: 99  YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLICXPRDR 263
           YLLAVLGGK +PA +D+EKILSSVG+E DAE+L KVI EL GK ++ LI   R++
Sbjct: 7   YLLAVLGGKDSPANSDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREK 61


>X05466-1|CAA29026.1|  113|Drosophila melanogaster r ribosomal
           protein protein.
          Length = 113

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 35/55 (63%), Positives = 43/55 (78%)
 Frame = +3

Query: 99  YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLICXPRDR 263
           YLLAVLGGK +PA  D+EKILSSVG+E DAE+L KVI EL GK ++ LI   R++
Sbjct: 7   YLLAVLGGKDSPANGDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREK 61


>AY119253-1|AAM51113.1|  113|Drosophila melanogaster SD22208p
           protein.
          Length = 113

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 35/55 (63%), Positives = 43/55 (78%)
 Frame = +3

Query: 99  YLLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLICXPRDR 263
           YLLAVLGGK +PA  D+EKILSSVG+E DAE+L KVI EL GK ++ LI   R++
Sbjct: 7   YLLAVLGGKDSPANGDLEKILSSVGVEVDAERLTKVIKELAGKSIDDLIKEGREK 61


>Z29361-1|CAA82545.1|  644|Drosophila melanogaster BTD protein.
          Length = 644

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = -3

Query: 283 ALTTASHRSRGXQISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 104
           A   +S +S     S S S+  S   +F S SAS S PT      T+AAAG +    T+S
Sbjct: 140 ASPNSSIQSAPSSASVSPSIFPSPAQSFASISASPSTPTTTLAPPTTAAAGALAGSPTSS 199


>AE014298-1363|AAF46518.1|  644|Drosophila melanogaster CG12653-PA
           protein.
          Length = 644

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/60 (36%), Positives = 29/60 (48%)
 Frame = -3

Query: 283 ALTTASHRSRGXQISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAS 104
           A   +S +S     S S S+  S   +F S SAS S PT      T+AAAG +    T+S
Sbjct: 140 ASPNSSIQSAPSSASVSPSIFPSPAQSFASISASPSTPTTTLAPPTTAAAGALAGSPTSS 199


>M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair
           protein protein.
          Length = 317

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 230 ILAVELSDYFLKLLSVSFDTDGAEDLLNVSGSWRGLA 120
           I  VEL D F K   V  D  G++ + N+  S RGLA
Sbjct: 15  IKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLA 51


>BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p
           protein.
          Length = 317

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 230 ILAVELSDYFLKLLSVSFDTDGAEDLLNVSGSWRGLA 120
           I  VEL D F K   V  D  G++ + N+  S RGLA
Sbjct: 15  IKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLA 51


>AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p
           protein.
          Length = 317

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 230 ILAVELSDYFLKLLSVSFDTDGAEDLLNVSGSWRGLA 120
           I  VEL D F K   V  D  G++ + N+  S RGLA
Sbjct: 15  IKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLA 51


>AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA
           protein.
          Length = 317

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 230 ILAVELSDYFLKLLSVSFDTDGAEDLLNVSGSWRGLA 120
           I  VEL D F K   V  D  G++ + N+  S RGLA
Sbjct: 15  IKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLA 51


>AY058297-1|AAL13526.1|  543|Drosophila melanogaster GH05942p
           protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 102 LLAVLGGKTTPAAADVEKILSSVGIEADAEK 194
           L+ ++G K  P AA  EK+LS + I ADA K
Sbjct: 105 LVKLIGPKNDPPAAMQEKVLSLIQIWADAFK 135


>AE014296-1660|AAF50267.2|  543|Drosophila melanogaster CG3529-PB
           protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 102 LLAVLGGKTTPAAADVEKILSSVGIEADAEK 194
           L+ ++G K  P AA  EK+LS + I ADA K
Sbjct: 105 LVKLIGPKNDPPAAMQEKVLSLIQIWADAFK 135


>AY084183-1|AAL89921.1|  315|Drosophila melanogaster RE62247p
           protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = -3

Query: 283 ALTTASHRSRGXQISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVV 125
           A   +S +S     S S S+  S   +F S SAS S PT      T+AAAG +
Sbjct: 140 ASPNSSIQSAPSSASVSPSIFPSPAQSFASISASPSTPTTTLAPPTTAAAGAL 192


>AE014298-1439|AAF46576.2|  313|Drosophila melanogaster CG15307-PA
           protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -3

Query: 277 TTASHRSRGXQISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLP 119
           TTA   +     S   +L   +V TF++ + S + PT + ++ T +   +V+P
Sbjct: 146 TTAVMSTLPIPTSTMATLQAQTVATFIAATGSKNRPTTIVVYPTVSPESIVIP 198


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,222,746
Number of Sequences: 53049
Number of extensions: 254770
Number of successful extensions: 970
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1705394754
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)