Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_E14
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   4.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   9.2  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 147 VEKILSSVGIEADAEKLKKVITELNGK 227
           V K +  +GI    +K+K ++ EL  K
Sbjct: 28  VGKGMKVIGIAPQVDKMKTLVEELKSK 54


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 408 GFGLLTKLYKSTRRWSLFQFXFLEY 482
           GF LL   ++++R W +    F  Y
Sbjct: 205 GFALLVYDFRNSRSWRITNNLFYPY 229


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 172 PTELRIFSTSAAAGVVLPPS 113
           P E    STS ++G++ P S
Sbjct: 304 PAEAESLSTSGSSGILTPVS 323


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/24 (25%), Positives = 13/24 (54%)
 Frame = +3

Query: 405 MGFGLLTKLYKSTRRWSLFQFXFL 476
           +G+GL+   ++  R W +    F+
Sbjct: 213 LGYGLIVYSWEQNRSWRITHSYFM 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,324
Number of Sequences: 438
Number of extensions: 1534
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)