Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_E09
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ...    29   1.8  
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ...    29   1.8  
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ...    29   1.8  
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.      29   1.8  
Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z68108-4|CAA92136.1|  246|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin pr...    27   9.7  
U41108-1|AAQ23120.1|  308|Caenorhabditis elegans Tropomodulin pr...    27   9.7  

>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4c protein.
          Length = 1045

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 257 ATTSSTGNY-HSAALGCPAAGGSRSDSTGTCQMTSNNIGIT 376
           +TT S G Y  S  L CP +  S S  TG C       G++
Sbjct: 587 STTCSKGKYGESCELSCPCSDASCSKQTGKCLCPLGTKGVS 627


>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4b protein.
          Length = 1070

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 257 ATTSSTGNY-HSAALGCPAAGGSRSDSTGTCQMTSNNIGIT 376
           +TT S G Y  S  L CP +  S S  TG C       G++
Sbjct: 587 STTCSKGKYGESCELSCPCSDASCSKQTGKCLCPLGTKGVS 627


>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
           protein Y47H9C.4a protein.
          Length = 1111

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 257 ATTSSTGNY-HSAALGCPAAGGSRSDSTGTCQMTSNNIGIT 376
           +TT S G Y  S  L CP +  S S  TG C       G++
Sbjct: 587 STTCSKGKYGESCELSCPCSDASCSKQTGKCLCPLGTKGVS 627


>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
          Length = 1111

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +2

Query: 257 ATTSSTGNY-HSAALGCPAAGGSRSDSTGTCQMTSNNIGIT 376
           +TT S G Y  S  L CP +  S S  TG C       G++
Sbjct: 587 STTCSKGKYGESCELSCPCSDASCSKQTGKCLCPLGTKGVS 627


>Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical
           protein C27C12.7 protein.
          Length = 829

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 302 SRELRSGSCQCSKLLLSNRIHHLRYSSFHLVTLNQRFTWN 183
           S  L+      ++L+ +N  H L +  FHL    QRF  N
Sbjct: 780 SEALQQNGIHFTQLVYANEAHSLSHKLFHLYGEVQRFLMN 819


>Z68108-4|CAA92136.1|  246|Caenorhabditis elegans Hypothetical
           protein T05A10.5 protein.
          Length = 246

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 284 GSCQCSKLLLSN--RIHHLRYSSFHLVTLNQRFTWNGRVRT 168
           GS QC   L+S+  R   L   +F+   L + F WNG   T
Sbjct: 41  GSFQCDNSLVSDVTRNFTLEQHNFYRSRLAKGFEWNGETNT 81


>U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin
           protein 2, isoform b protein.
          Length = 639

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 67  KMAQGQAKSKNEATLRXPKLKRAKIRQKVKRSR 165
           ++ +G+ K +N ATLR  +LKR K R+  +++R
Sbjct: 224 RLPEGRHKVEN-ATLRNGELKRVKRREAAQKAR 255


>U41108-1|AAQ23120.1|  308|Caenorhabditis elegans Tropomodulin
           protein 2, isoform a protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 67  KMAQGQAKSKNEATLRXPKLKRAKIRQKVKRSR 165
           ++ +G+ K +N ATLR  +LKR K R+  +++R
Sbjct: 224 RLPEGRHKVEN-ATLRNGELKRVKRREAAQKAR 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,421,315
Number of Sequences: 27780
Number of extensions: 115419
Number of successful extensions: 325
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)