Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_E07
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 29 0.58
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 28 1.0
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 28 1.3
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 27 2.3
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 27 3.1
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 27 3.1
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 26 5.4
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 25 7.2
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 25 9.5
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa... 25 9.5
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 25 9.5
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 9.5
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.5
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 29.1 bits (62), Expect = 0.58
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = +2
Query: 269 ENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHDSYFAVMAEKKPSYCCYIEECKQKFNN 448
+NH H SC+ C + + L H+ + + E++ +Y C +E CK+ F
Sbjct: 195 QNHIREAHVPSCSICGRQFKTAAHLRHHVVLHQTTL-----EERKTYHCPMEGCKKSFTR 249
Query: 449 TADRLDH 469
++ H
Sbjct: 250 SSALKKH 256
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +2
Query: 188 GNYNTQFKQTPCSIPGCKHIADTLLDYENHYNATH 292
G+ + ++ CS P C + L D H N+ H
Sbjct: 340 GHGYKEAREYSCSFPECNYRFKRLYDMHRHLNSHH 374
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Frame = +2
Query: 176 DVDDGNYNTQFKQTPCS---IPGCKHIADTL 259
DV D Y ++ + TPCS +PGC D L
Sbjct: 377 DVMDSQYGSKIEDTPCSLHNVPGCFSCFDRL 407
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 513 DKKRIKNKMPNAMDVDESKSHKFHLNNSKQKTFSKNK 623
DKK + K M++DE KS +N + +K K++
Sbjct: 846 DKKTTEEKEATPMEMDEEKSQDISINGNSKKEEPKSE 882
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Frame = +2
Query: 221 CSIPGCKHIADTLLDYENHYNATHR----YSCAQCKKVLPSPHFLDLHIQENHDSYFAVM 388
C+ P C + T ++ + TH +SC+ C + L+ H+Q+ H +
Sbjct: 28 CTYPDCPK-SFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQNLS 86
Query: 389 AEKKPSYCCYIEEC 430
+ + C++ C
Sbjct: 87 ERRMLNASCFLGFC 100
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 513 DKKRIKNKMPNAMDVDESKSHKFHLNNSKQKTFSKNKYAG-KKFTSD 650
+ K ++N + ++ + KFH + ++K+F YAG +KF D
Sbjct: 18 ESKSVENNKDHIVENSSPIASKFHEFDEQKKSFEIINYAGHEKFVDD 64
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -1
Query: 235 SWYAAGSLFKLGVIISIVHIVNSKSSWLFIMYKQNIMKHPFSYSIFF 95
++Y G LFKL + + VH+ N+ + ++ +I P S+ + F
Sbjct: 188 AYYIMGLLFKLYLRLDCVHLTNNVLRAMKVVELPDISLFPKSHVVIF 234
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 25.8 bits (54), Expect = 5.4
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 8/96 (8%)
Frame = +2
Query: 221 CSIPGCKHIADTLLDYENHYNATHR-YSC-------AQCKKVLPSPHFLDLHIQENHDSY 376
C GC +L ++ H H SC A C VLPS F ++H++ + ++
Sbjct: 1002 CQWEGCLANLHSLENFIKHVLLLHHPKSCSVVKCLWASCDMVLPSEEF-EMHLRGHLNNI 1060
Query: 377 FAVMAEKKPSYCCYIEECKQKFNNTADRLDHCVREH 484
C + CK+ F+N D H H
Sbjct: 1061 ---------RLNCEVSNCKKCFSNYEDMFKHLQHSH 1087
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +3
Query: 537 MPNAMDVDESKSHKFHLNNSK---QKTFSKNKYAGK 635
M +A SKS FH+NN K +K+ +N+ GK
Sbjct: 239 MSSASANKPSKSSGFHINNGKSKEEKSHGENESGGK 274
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 218 PCSIPGCKHIADTLLDYENHYNATHR-YSCAQCKKVLPSPH 337
PC+I I + L+D NH+NA +R YS + K+V H
Sbjct: 372 PCAII----IMECLVDAPNHHNAIYRKYSENRMKRVSAFAH 408
>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
sulfurtransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 298
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 516 KKRIKNKMPNAM--DVDESKSHKFHLNNSKQKTFSKNKYAGK 635
K+ +++++P A D+DE+K HK L + Y GK
Sbjct: 46 KEYLESRLPGAQYFDIDEAKDHKNPLPHMLPPADEFASYVGK 87
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 383 VMAEKKPSYCCYIEECKQKFNN 448
+ + KP YC E C++KF+N
Sbjct: 490 IRVDAKPGYC---ENCREKFDN 508
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/31 (29%), Positives = 23/31 (74%)
Frame = +3
Query: 519 KRIKNKMPNAMDVDESKSHKFHLNNSKQKTF 611
++IKN +P +D+D++K+ + ++ N K+ ++
Sbjct: 497 EKIKNIVPFYVDIDDTKTTEEYIINFKKNSW 527
>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 609
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 293 RYSC--AQCKKVLPSPHFLDLHIQENHDSYFAVMAEKKPSYCCY 418
+Y C C K+ P F+ HI + H + + KK + C Y
Sbjct: 473 KYRCHVGTCAKLFLGPEFVRKHINKKHKDWLDHI--KKVAICLY 514
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,927
Number of Sequences: 5004
Number of extensions: 60181
Number of successful extensions: 204
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -