Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_E05
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...   128   5e-31
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...   116   4e-27
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    92   7e-20
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    87   2e-18
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    84   2e-17
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    83   3e-17
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    29   0.77 
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    27   3.1  
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ...    26   5.5  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    25   7.2  
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    25   7.2  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    25   7.2  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   9.5  

>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score =  128 bits (310), Expect = 5e-31
 Identities = 64/170 (37%), Positives = 99/170 (58%), Gaps = 6/170 (3%)
 Frame = +2

Query: 143 ILVQMLKDEDNKYCVDCDA-KGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSW 319
           +L  +L++  NK C DC   + PRWASWNLG+F+CIRC+G+HR+LGVH+S+VKSV+LDSW
Sbjct: 15  VLKSLLREPYNKVCADCKRNEQPRWASWNLGVFICIRCSGVHRSLGVHVSRVKSVDLDSW 74

Query: 320 TPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMSLESFIRAKYEQKKYIAKEWVP-PQ 496
           T EQ  ++ + GN RA   +EA L        +D  + +FI+ KYE KK++    +P P+
Sbjct: 75  TDEQTENMTRWGNERANLYWEAKLAGG--HVPSDSKIATFIKTKYEFKKWVLYPEIPSPE 132

Query: 497 LPKVNWD----KEIDEEMDRQKRKKKSATSSLGPLPAPAVADKKYNKSDV 634
             K   +     E++  +D     + S+  S+    +  V +    K  +
Sbjct: 133 TLKPEQNTRPVSEVNASLDLNTASRSSSAHSVKSTSSATVTNVTSKKEAI 182


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score =  116 bits (278), Expect = 4e-27
 Identities = 61/158 (38%), Positives = 81/158 (51%), Gaps = 8/158 (5%)
 Frame = +2

Query: 173 NKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSWTPEQVVSLQQM 352
           N  C DC  +G +WASWNLGIFLC+RCA IHR LG H+SKVKS++LD W+ +Q+  ++  
Sbjct: 20  NNLCADCSTRGVQWASWNLGIFLCLRCATIHRKLGTHVSKVKSISLDEWSNDQIEKMKHW 79

Query: 353 GNSRARAVYEANLPDSFRRPQNDMS----LESFIRAKYEQKKYI----AKEWVPPQLPKV 508
           GN  A   +  N P S   P N +S    +E +IR KYE+K ++    +    PP LP  
Sbjct: 80  GNINANRYWNPN-PLSHPLPTNALSDEHVMEKYIRDKYERKLFLDENHSTNSKPPSLPPR 138

Query: 509 NWDKEIDEEMDRQKRKKKSATSSLGPLPAPAVADKKYN 622
                    M      K     SL  L     +D   N
Sbjct: 139 TKSSSQSSPMASTSTSKSRYADSLSTLHDMGFSDDSVN 176


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 923

 Score = 91.9 bits (218), Expect = 7e-20
 Identities = 50/143 (34%), Positives = 81/143 (56%), Gaps = 3/143 (2%)
 Frame = +2

Query: 140  NILVQMLKDED--NKYCVDCDA-KGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNL 310
            NI +QML+  D  N  C DC + K   W S N+ + LCI C+GIHR+LG HISK +S+ L
Sbjct: 714  NIFIQMLRKTDVSNSVCADCGSVKDVTWCSINIPVVLCIECSGIHRSLGTHISKTRSLLL 773

Query: 311  DSWTPEQVVSLQQMGNSRARAVYEANLPDSFRRPQNDMSLESFIRAKYEQKKYIAKEWVP 490
            DS + +  V L ++GN+    VYE  L +   +P+ + + +  ++  + QKKY+   ++ 
Sbjct: 774  DSLSQQSKVLLCKIGNAAVNRVYEKGLSNPSLKPKPEHNAQ--VKLAFAQKKYVEHAFI- 830

Query: 491  PQLPKVNWDKEIDEEMDRQKRKK 559
                 V+ D  + E +++ K  K
Sbjct: 831  -DFAGVDADATLLEGLEQNKISK 852


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 87.4 bits (207), Expect = 2e-18
 Identities = 37/75 (49%), Positives = 52/75 (69%)
 Frame = +2

Query: 146 LVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKVKSVNLDSWTP 325
           L Q+ +  +NK C DCDA  P+WAS NLGIF+C+ C+G HR LGV  S V+S+ +D+W+ 
Sbjct: 5   LDQLTRLPENKKCFDCDAPNPQWASCNLGIFICLDCSGQHRGLGVEKSFVRSITMDNWSE 64

Query: 326 EQVVSLQQMGNSRAR 370
            QV  ++  GNS A+
Sbjct: 65  RQVKMMEVGGNSNAK 79


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 38/89 (42%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
 Frame = +2

Query: 125 QDRCQNILVQMLKDEDNKYCVDCDAKGPRWASWNLGIFLCIRCAGIHRNLGVHISKV--- 295
           ++  Q +L  +    DNK C DC AK P W+S   GI+LC+ C+  HRN+GVHIS V   
Sbjct: 5   KEESQKLLTSLRSQRDNKVCFDCGAKNPTWSSTTFGIYLCLDCSAAHRNMGVHISFVRFL 64

Query: 296 KSVNLDSWTPEQVVSLQQMGNSRARAVYE 382
           +S  LDSWT  Q+  ++  GN  AR  ++
Sbjct: 65  RSTVLDSWTYAQLRVMRVGGNENARNYFK 93


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 870

 Score = 83.0 bits (196), Expect = 3e-17
 Identities = 44/131 (33%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
 Frame = +2

Query: 92   SKSEKDRAKQIQDRCQNILVQMLKD--EDNKYCVDCDAKGP-RWASWNLGIFLCIRCAGI 262
            S+   D  ++ Q +  + LV+ LK+    ++ C DC+      W + N  + LCI C+GI
Sbjct: 655  SRHNSDSKEKKQTKSPS-LVKTLKEMHSSDQSCADCNTTARVEWCAINFPVVLCIDCSGI 713

Query: 263  HRNLGVHISKVKSVNLDSWTPEQVVSLQQMGNSRARAVYEANLPD-SFRRPQNDMSLESF 439
            HR+LG HI+K++S+ LD + PE V  L   GNS    +YE  + D   +  +N      F
Sbjct: 714  HRSLGTHITKIRSLTLDKFNPETVDLLYATGNSFVNEIYEGGITDWKIKNFENQERRVQF 773

Query: 440  IRAKYEQKKYI 472
            ++ KY  K++I
Sbjct: 774  VKDKYLYKRFI 784


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 440 IRAKYEQKKYIAKEWVPPQLPKVNWDKEIDEEM 538
           +R   +Q K    EW+ P + K  W +E DE++
Sbjct: 37  VRKTPKQCKARWYEWIDPSIKKTEWSREEDEKL 69


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 929

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 500  PKVNWDKEIDEEMDRQKRKKKSATSSLGPLPAPAVADKKYNKSDVIPSIPK 652
            P    D ++   +  +KR KK+A  +   +P P  + ++Y +S  +P  P+
Sbjct: 849  PSKRKDSKLKHVIINEKRNKKAAKLTADSVPFPFESREQYERSLNLPMGPE 899


>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 509 NWDKEIDEEMDRQKRKKKSATSSLGPLPAPAVADKKYNKS--DVIPSIPK 652
           +W  E  E+ D++ RKKK    ++      + A K YN+   D+ P   K
Sbjct: 80  DWTIEESEKWDQRLRKKKQTIQNVAFSDYHSQASKDYNRGIRDLKPDYEK 129


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 653 VSVCSVSRRTCYISYQQQRGPVGVRAMTSPTSFSFSVDPSLR 528
           + + S+   TC  ++    GPV   A+     FS S+D +++
Sbjct: 416 IKIWSLETNTCLHTFSAHIGPVQSLALADSRLFSCSLDGTIK 457


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +2

Query: 380 EANLPDSFRRPQNDMSLESF--IRAKYEQKKYIAKEWVPPQLPKVNWDKEIDEEMDRQKR 553
           E  LPD        M LE    +  KY+ K   A + V  +LP+V+  K+   E  ++ +
Sbjct: 14  EVKLPDHLDDFDGFMGLEEIEGVDIKYQPKG--AMKEVIYELPEVHEKKDKKPEKRKKDQ 71

Query: 554 KKKSATSSLGPLPAPAV 604
           K+ S     G   +P +
Sbjct: 72  KEASEKKKKGKRTSPTI 88


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 360 LFPICCSDTTCSGVHESRLTLFTLEM*TPRFRWIPAQRMHRN 235
           L  I    T CS V +  LT F L+  + +FR++     HRN
Sbjct: 211 LLQILMEYTDCSNVRD--LTRFDLKRLSRKFRFLKVTCQHRN 250


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 506 VNWDKEIDEEMDRQKRKKKSATSSLGPLPAPAVADKKYNKSDVIPSI 646
           V  D+ +      + + K +  S+  P   P   DK+Y +S+ IP+I
Sbjct: 365 VTGDQYLSLNNGTESQSKTTKHSTSLPSTEPVEVDKQYMESEKIPTI 411


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,039
Number of Sequences: 5004
Number of extensions: 59887
Number of successful extensions: 220
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)