Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_E04
(554 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 137 6e-33
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 137 6e-33
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 130 1e-30
12_02_0020 - 12388777-12389062,12389637-12389818 31 0.47
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 31 0.82
06_03_0930 - 26038341-26038508,26039114-26039254,26040799-260408... 30 1.4
06_01_1074 - 8765183-8765278,8765657-8765749,8766520-8766600,876... 29 1.9
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 28 4.4
01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767... 28 4.4
11_03_0006 + 8878611-8878724,8879323-8879706 28 5.8
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 28 5.8
03_05_0528 - 25268396-25269217 28 5.8
02_05_0460 - 29224525-29224620,29225525-29226625 27 7.6
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 137 bits (331), Expect = 6e-33
Identities = 60/97 (61%), Positives = 82/97 (84%)
Frame = +2
Query: 44 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 223
M++PK+NR I +YLF+EGV+ AKKDY+ KH +++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 224 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 334
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSAR 96
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 137 bits (331), Expect = 6e-33
Identities = 60/97 (61%), Positives = 82/97 (84%)
Frame = +2
Query: 44 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 223
M++PK+NR I +YLF+EGV+ AKKDY+ KH +++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 224 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 334
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSAR 96
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 130 bits (313), Expect = 1e-30
Identities = 56/97 (57%), Positives = 79/97 (81%)
Frame = +2
Query: 44 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 223
M++ K+NR I +YLF EGV+ AKKDY+ KH +++ +PNL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 224 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 334
+W+H+YWYLTN+GIE+LR +L+LP E+VP TLK+S +
Sbjct: 60 SWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAK 96
>12_02_0020 - 12388777-12389062,12389637-12389818
Length = 155
Score = 31.5 bits (68), Expect = 0.47
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 318 LSAQYVQRQYAVALXGRPDAPARSAEDRSAYRRTPAAP 431
++A + A A+ GRP R E+RS +RTP+ P
Sbjct: 33 VAAAHADADAAAAVIGRPKGEGREWEERSRSQRTPSPP 70
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 30.7 bits (66), Expect = 0.82
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 74 IYEYLFKEGVMVA-KKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 250
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E Y Y+
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYV 143
Query: 251 TNEGIE-YLRIFLHLP 295
N + +L H P
Sbjct: 144 PNGSVSTHLHGSSHAP 159
>06_03_0930 -
26038341-26038508,26039114-26039254,26040799-26040858,
26040972-26041034,26041444-26041454,26041722-26041802,
26042783-26043020,26043563-26043997
Length = 398
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +3
Query: 381 ARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRG 512
AR RS+ RR+P+ G A + G ++ L++ GG G G
Sbjct: 58 ARGKRSRSSRRRSPSGSGSAATKGRWARGSPASPLDYSGGSGSG 101
>06_01_1074 -
8765183-8765278,8765657-8765749,8766520-8766600,
8767092-8767173,8767261-8767313,8767391-8767456,
8767534-8767697,8768028-8768295
Length = 300
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +3
Query: 387 SAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYGRGRP 518
SA RS R TP P + PH K+A P S L G G P
Sbjct: 3 SAAPRS--RLTPPTPAMHPHRKRARSPPASGSLVRCSSSGNGAP 44
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -3
Query: 486 QDQLSLDQHQPFYHEVQHQGQQEYVCMQICPQQSGLGHQDDQ 361
Q Q L QHQ + Q Q QQ+ + Q QQ L Q Q
Sbjct: 41 QQQQKLPQHQHLQQQQQQQQQQQKLQQQQQQQQQKLQQQQQQ 82
>01_01_0972 +
7672048-7672390,7672546-7672709,7672864-7672961,
7673040-7673361,7674021-7675220
Length = 708
Score = 28.3 bits (60), Expect = 4.4
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +2
Query: 8 FLC*VSLQAAFKMLMPKQNRVAIYEYLFKEGVMVAK--KDYHAPKHTELEKIPNLQVIKA 181
FL V+ + F L + + Y+ ++ G VA +H PK K+ + A
Sbjct: 152 FLFLVTFSSLFCTLPLRNTMIVDYKLIYPSGSAVAGIVNSFHTPKGATKAKLQ----VNA 207
Query: 182 MQSLKSRGYVKEQFAWRHFYWYLT 253
M KS V FAW F W+ T
Sbjct: 208 M--FKS---VAGSFAWAFFQWFYT 226
>11_03_0006 + 8878611-8878724,8879323-8879706
Length = 165
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 342 QYAVALXGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSADLE 488
+ AV + GR AR+ R A R P G APH DV P + + E
Sbjct: 90 ELAVLVSGRGGVRARTPLHRYAAPRVPEPAGAAPH---GDVFPSAGEGE 135
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 173 IKAMQSLKSRGYVKEQFAWRH---FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTET 343
I + L S G WR F+ YLT E I YL +HL + +T RS+ +
Sbjct: 605 ISSNAQLDSPGSANSSPFWRQVEPFFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDE 661
Query: 344 VRR 352
R+
Sbjct: 662 SRK 664
>03_05_0528 - 25268396-25269217
Length = 273
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 468 PGSADLEFKGGYGRG 512
PGS +LE GGYG G
Sbjct: 106 PGSTELEINGGYGEG 120
>02_05_0460 - 29224525-29224620,29225525-29226625
Length = 398
Score = 27.5 bits (58), Expect = 7.6
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +3
Query: 318 LSAQYVQRQYAVALXGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSA 479
L+ ++Q++ V APA AE S R P P PH A V SA
Sbjct: 257 LAPPHMQKRPPVLPVSPASAPAALAESSSEELRPPPLPSSHPHAHAAAVVAASA 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,796,474
Number of Sequences: 37544
Number of extensions: 295766
Number of successful extensions: 781
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -