Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_D24
(410 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 87 1e-18
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 87 1e-18
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 27 1.1
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 25 3.5
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 3.5
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 4.6
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 25 6.1
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 6.1
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 25 6.1
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 86.6 bits (205), Expect = 1e-18
Identities = 39/61 (63%), Positives = 45/61 (73%)
Frame = +2
Query: 47 FSTPXMGLWDSIPKRGPVGHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGF 226
F P G +P++ RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPG
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 227 K 229
K
Sbjct: 66 K 66
Score = 59.7 bits (138), Expect = 2e-10
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Frame = +1
Query: 46 FQHPXHGSMGFYPKKRSRRSSW*GQGVPERRP*QTCSFDCF--YRL*GRYDPRG*RT*PS 219
F+ P HGS+GF P+KR+ R + P+ + F Y+ + R S
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 220 RLQKSTRKXXXXXXXXXXXXXXFVSXVVGYIETPHGLRALXTVWAEHMSEDCRR 381
++ K + V VVGY+ETP GLR+L TVWAEH+SE+ +R
Sbjct: 66 KMHK---REILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKR 116
Score = 45.2 bits (102), Expect = 4e-06
Identities = 31/88 (35%), Positives = 41/88 (46%)
Frame = +3
Query: 30 MSHRKFSAPRSWVYGILSQKEXXXXXXXXXXXXXKTTLANLFI*LLLSVIRPV*PTWLEN 209
MSH KF PR G L +K + + L + + +
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGM-THIVRD 59
Query: 210 LTVPASKINKKEIVEAVTIIETPPMVCV 293
L P SK++K+EI+EAVTIIETPPMV V
Sbjct: 60 LDRPGSKMHKREILEAVTIIETPPMVVV 87
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 86.6 bits (205), Expect = 1e-18
Identities = 39/61 (63%), Positives = 45/61 (73%)
Frame = +2
Query: 47 FSTPXMGLWDSIPKRGPVGHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGF 226
F P G +P++ RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPG
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 227 K 229
K
Sbjct: 66 K 66
Score = 59.7 bits (138), Expect = 2e-10
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Frame = +1
Query: 46 FQHPXHGSMGFYPKKRSRRSSW*GQGVPERRP*QTCSFDCF--YRL*GRYDPRG*RT*PS 219
F+ P HGS+GF P+KR+ R + P+ + F Y+ + R S
Sbjct: 6 FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65
Query: 220 RLQKSTRKXXXXXXXXXXXXXXFVSXVVGYIETPHGLRALXTVWAEHMSEDCRR 381
++ K + V VVGY+ETP GLR+L TVWAEH+SE+ +R
Sbjct: 66 KMHK---REILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKR 116
Score = 44.8 bits (101), Expect = 5e-06
Identities = 30/88 (34%), Positives = 41/88 (46%)
Frame = +3
Query: 30 MSHRKFSAPRSWVYGILSQKEXXXXXXXXXXXXXKTTLANLFI*LLLSVIRPV*PTWLEN 209
MSH KF PR G L +K + + L + + +
Sbjct: 1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGM-THIVRD 59
Query: 210 LTVPASKINKKEIVEAVTIIETPPMVCV 293
L P SK++K+EI+EAVT+IETPPMV V
Sbjct: 60 LDRPGSKMHKREILEAVTVIETPPMVVV 87
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 27.1 bits (57), Expect = 1.1
Identities = 27/99 (27%), Positives = 39/99 (39%)
Frame = +2
Query: 104 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGFKNQQERDRGGCHHHRDSSD 283
H V F KD+ + +H+ F + M+ V R PD G + R +SD
Sbjct: 633 HLVTVSIFGKDESYELLHICEFNSTRKRMSIVFRCPD--GKIRLYVKGADTVIMERLASD 690
Query: 284 GLCRVLLDTLRPLMDYALCXLSGRSICLKTVDVRFYKNW 400
L T+ L DYA L I ++ V Y+ W
Sbjct: 691 N--PYLQTTIHHLEDYATVGLRTLCIAMREVPEDEYQRW 727
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 3.5
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 263 HHRDSSDGLCRVLLDTLRPL--MDYALCXLSGRSICLKTVD 379
H+R+ D CR L RP+ + + + GR +C VD
Sbjct: 129 HYRNFQDFFCRELRPETRPVDPVSPVVSPVDGRIVCQGVVD 169
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.4 bits (53), Expect = 3.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 181 LITDKSSQMNRFARVVFRERLDLTTMTDGTSFWDRIP 71
LIT ++ ++ RFA +V+R L + + + IP
Sbjct: 573 LITSQTDELLRFANLVYRFFLSIGELNSAYDLYTHIP 609
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.0 bits (52), Expect = 4.6
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 204 ENLTVPASKINKKEIVEAVTI 266
E+LT P+ K+NK+ IV+ ++
Sbjct: 1142 ESLTTPSGKVNKEVIVDDTSL 1162
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 24.6 bits (51), Expect = 6.1
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = -2
Query: 271 SMMVTASTISFLLIFEAGTVRFSNHVGHTGLITDKSSQ 158
S++ +S S++L+F T+R + G++ DK+++
Sbjct: 267 SILTASSDSSYILLFYVSTIRCFVALDPPGVLLDKAAK 304
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 24.6 bits (51), Expect = 6.1
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +2
Query: 86 KRGPVGHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH 196
++ H V++ PK+ P KPV T + G H
Sbjct: 288 QQAKANHSANVQSRPKNYPQKPVQTTPEAVHANGSMH 324
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 24.6 bits (51), Expect = 6.1
Identities = 8/23 (34%), Positives = 11/23 (47%)
Frame = +2
Query: 224 FKNQQERDRGGCHHHRDSSDGLC 292
F + D G HHH S+ +C
Sbjct: 471 FNHGHNHDHGSHHHHSHSNHSMC 493
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,446
Number of Sequences: 5004
Number of extensions: 32079
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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