Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_D24
(410 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 84 4e-17
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 83 8e-17
07_01_1004 + 8500584-8501881,8502194-8502402,8503024-8503266,850... 30 0.83
04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733... 28 3.3
04_04_1587 + 34630678-34632282 27 5.8
08_01_0919 + 9062859-9062994,9063204-9063333,9063424-9064108 27 7.7
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 84.2 bits (199), Expect = 4e-17
Identities = 36/66 (54%), Positives = 48/66 (72%)
Frame = +2
Query: 32 VAQKIFSTPXMGLWDSIPKRGPVGHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 211
++ + F P G +P++ HRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREV 60
Query: 212 DRPGFK 229
++PG K
Sbjct: 61 EKPGSK 66
Score = 62.1 bits (144), Expect = 2e-10
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Frame = +1
Query: 46 FQHPXHGSMGFYPKKRSRRSSW*GQGVPERRP*QTCSFDCF--YRL*GRYDPRG*RT*PS 219
F+HP HGS+GF P+KRS R + P+ + C F Y+ + R S
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 220 RLQKSTRKXXXXXXXXXXXXXXFVSXVVGYIETPHGLRALXTVWAEHMSEDCRR 381
+L K K + +V Y++TP GLR+L +VWA+H+SE+ RR
Sbjct: 66 KLHK---KETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRR 116
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 83.0 bits (196), Expect = 8e-17
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +2
Query: 32 VAQKIFSTPXMGLWDSIPKRGPVGHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 211
++ + F P G +P++ HRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE
Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREV 60
Query: 212 DRPGFK 229
++PG K
Sbjct: 61 EKPGSK 66
Score = 62.5 bits (145), Expect = 1e-10
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Frame = +1
Query: 46 FQHPXHGSMGFYPKKRSRRSSW*GQGVPERRP*QTCSFDCF--YRL*GRYDPRG*RT*PS 219
F+HP HGS+GF P+KRS R + P+ + C F Y+ + R S
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 220 RLQKSTRKXXXXXXXXXXXXXXFVSXVVGYIETPHGLRALXTVWAEHMSEDCRR 381
+L K K V +V Y++TP GLR+L +VWA+H+SE+ RR
Sbjct: 66 KLHK---KETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRR 116
>07_01_1004 +
8500584-8501881,8502194-8502402,8503024-8503266,
8503381-8503697,8503891-8504250
Length = 808
Score = 29.9 bits (64), Expect = 0.83
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -2
Query: 274 VSMMVTASTISFLLIFEAGTVRFSNHVGHTGLITDKSSQMNRFARVV 134
++M VT +T FLL+F A T+ S G TD+ S + F +
Sbjct: 1 MTMKVTTATAHFLLVFLASTISHSVICSALGNETDQLSSLLEFKNAI 47
>04_03_0927 + 20871487-20871903,20872667-20872812,20873204-20873301,
20873378-20873572,20873670-20873797,20873892-20874050,
20875119-20875223,20875449-20875559,20875653-20875790,
20875909-20876091,20876362-20876517,20876615-20876738,
20876820-20877030,20877614-20877729,20877828-20878053,
20878218-20878311,20879198-20879275,20879822-20879971,
20880086-20880292,20880584-20880788,20880990-20881096
Length = 1117
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 116 VKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGFKNQQERDRG 253
+++ P SKP A+ YKA TH + P F+ QQ RG
Sbjct: 1044 LQSTPAPAGSKPA---AYQSYKAPATHQPVQVSSPSFRRQQTNKRG 1086
>04_04_1587 + 34630678-34632282
Length = 534
Score = 27.1 bits (57), Expect = 5.8
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +2
Query: 83 PKRGPVGHRGKV-KAFPKDDPSKPVHLTAFIGYKAGMT 193
P R GH G P P P A +G+KAG+T
Sbjct: 29 PPRAEAGHDGAGGDDEPPPTPCSPADRAALLGFKAGVT 66
>08_01_0919 + 9062859-9062994,9063204-9063333,9063424-9064108
Length = 316
Score = 26.6 bits (56), Expect = 7.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 236 QERDRGGCHHHRDSS 280
+ +DRGG HHHR S
Sbjct: 120 RRKDRGGGHHHRSQS 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,590,220
Number of Sequences: 37544
Number of extensions: 231840
Number of successful extensions: 550
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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