Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_D24
(410 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 87 4e-18
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 87 4e-18
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 87 4e-18
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 87 4e-18
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 87 4e-18
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 87 4e-18
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 32 0.19
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 32 0.19
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 87.4 bits (207), Expect = 4e-18
Identities = 39/71 (54%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Frame = +2
Query: 32 VAQKIFSTPXMGLWDSIPKRGPVGHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 211
++ + FS P G PK+ +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 212 DRPGFK-NQQE 241
D+PG K N++E
Sbjct: 61 DKPGSKVNKKE 71
Score = 56.4 bits (130), Expect = 8e-09
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Frame = +1
Query: 46 FQHPXHGSMGFYPKKRSRRSSW*GQGVPERRP*QTCSFDCF--YRL*GRYDPRG*RT*PS 219
F P HG MGF PKKRSR + P+ + F Y+ + R S
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 220 RLQKSTRKXXXXXXXXXXXXXXFVSXVVGYIETPHGLRALXTVWAEHMSEDCRR 381
++ K K ++ V GY++TP G RAL T+WAEH+SE+ RR
Sbjct: 66 KVNK---KEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARR 116
Score = 52.0 bits (119), Expect = 2e-07
Identities = 32/86 (37%), Positives = 42/86 (48%)
Frame = +3
Query: 30 MSHRKFSAPRSWVYGILSQKEXXXXXXXXXXXXXKTTLANLFI*LLLSVIRPV*PTWLEN 209
MSHRKFSAPR G +K + + L + + +
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGM-THIVRD 59
Query: 210 LTVPASKINKKEIVEAVTIIETPPMV 287
+ P SK+NKKE+VEAVTI+ETPPMV
Sbjct: 60 VDKPGSKVNKKEVVEAVTIVETPPMV 85
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 87.4 bits (207), Expect = 4e-18
Identities = 39/71 (54%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Frame = +2
Query: 32 VAQKIFSTPXMGLWDSIPKRGPVGHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 211
++ + FS P G PK+ +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 212 DRPGFK-NQQE 241
D+PG K N++E
Sbjct: 61 DKPGSKVNKKE 71
Score = 56.4 bits (130), Expect = 8e-09
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Frame = +1
Query: 46 FQHPXHGSMGFYPKKRSRRSSW*GQGVPERRP*QTCSFDCF--YRL*GRYDPRG*RT*PS 219
F P HG MGF PKKRSR + P+ + F Y+ + R S
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 220 RLQKSTRKXXXXXXXXXXXXXXFVSXVVGYIETPHGLRALXTVWAEHMSEDCRR 381
++ K K ++ V GY++TP G RAL T+WAEH+SE+ RR
Sbjct: 66 KVNK---KEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARR 116
Score = 52.0 bits (119), Expect = 2e-07
Identities = 32/86 (37%), Positives = 42/86 (48%)
Frame = +3
Query: 30 MSHRKFSAPRSWVYGILSQKEXXXXXXXXXXXXXKTTLANLFI*LLLSVIRPV*PTWLEN 209
MSHRKFSAPR G +K + + L + + +
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGM-THIVRD 59
Query: 210 LTVPASKINKKEIVEAVTIIETPPMV 287
+ P SK+NKKE+VEAVTI+ETPPMV
Sbjct: 60 VDKPGSKVNKKEVVEAVTIVETPPMV 85
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 87.4 bits (207), Expect = 4e-18
Identities = 39/71 (54%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Frame = +2
Query: 32 VAQKIFSTPXMGLWDSIPKRGPVGHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 211
++ + FS P G PK+ +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 212 DRPGFK-NQQE 241
D+PG K N++E
Sbjct: 61 DKPGSKVNKKE 71
Score = 56.4 bits (130), Expect = 8e-09
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Frame = +1
Query: 46 FQHPXHGSMGFYPKKRSRRSSW*GQGVPERRP*QTCSFDCF--YRL*GRYDPRG*RT*PS 219
F P HG MGF PKKRSR + P+ + F Y+ + R S
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 220 RLQKSTRKXXXXXXXXXXXXXXFVSXVVGYIETPHGLRALXTVWAEHMSEDCRR 381
++ K K ++ V GY++TP G RAL T+WAEH+SE+ RR
Sbjct: 66 KVNK---KEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARR 116
Score = 52.0 bits (119), Expect = 2e-07
Identities = 32/86 (37%), Positives = 42/86 (48%)
Frame = +3
Query: 30 MSHRKFSAPRSWVYGILSQKEXXXXXXXXXXXXXKTTLANLFI*LLLSVIRPV*PTWLEN 209
MSHRKFSAPR G +K + + L + + +
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGM-THIVRD 59
Query: 210 LTVPASKINKKEIVEAVTIIETPPMV 287
+ P SK+NKKE+VEAVTI+ETPPMV
Sbjct: 60 VDKPGSKVNKKEVVEAVTIVETPPMV 85
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 87.4 bits (207), Expect = 4e-18
Identities = 39/71 (54%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Frame = +2
Query: 32 VAQKIFSTPXMGLWDSIPKRGPVGHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 211
++ + FS P G PK+ +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 212 DRPGFK-NQQE 241
D+PG K N++E
Sbjct: 61 DKPGSKVNKKE 71
Score = 56.4 bits (130), Expect = 8e-09
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Frame = +1
Query: 46 FQHPXHGSMGFYPKKRSRRSSW*GQGVPERRP*QTCSFDCF--YRL*GRYDPRG*RT*PS 219
F P HG MGF PKKRSR + P+ + F Y+ + R S
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 220 RLQKSTRKXXXXXXXXXXXXXXFVSXVVGYIETPHGLRALXTVWAEHMSEDCRR 381
++ K K ++ V GY++TP G RAL T+WAEH+SE+ RR
Sbjct: 66 KVNK---KEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARR 116
Score = 52.0 bits (119), Expect = 2e-07
Identities = 32/86 (37%), Positives = 42/86 (48%)
Frame = +3
Query: 30 MSHRKFSAPRSWVYGILSQKEXXXXXXXXXXXXXKTTLANLFI*LLLSVIRPV*PTWLEN 209
MSHRKFSAPR G +K + + L + + +
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGM-THIVRD 59
Query: 210 LTVPASKINKKEIVEAVTIIETPPMV 287
+ P SK+NKKE+VEAVTI+ETPPMV
Sbjct: 60 VDKPGSKVNKKEVVEAVTIVETPPMV 85
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 87.4 bits (207), Expect = 4e-18
Identities = 39/71 (54%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Frame = +2
Query: 32 VAQKIFSTPXMGLWDSIPKRGPVGHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 211
++ + FS P G PK+ +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 212 DRPGFK-NQQE 241
D+PG K N++E
Sbjct: 61 DKPGSKVNKKE 71
Score = 56.4 bits (130), Expect = 8e-09
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Frame = +1
Query: 46 FQHPXHGSMGFYPKKRSRRSSW*GQGVPERRP*QTCSFDCF--YRL*GRYDPRG*RT*PS 219
F P HG MGF PKKRSR + P+ + F Y+ + R S
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 220 RLQKSTRKXXXXXXXXXXXXXXFVSXVVGYIETPHGLRALXTVWAEHMSEDCRR 381
++ K K ++ V GY++TP G RAL T+WAEH+SE+ RR
Sbjct: 66 KVNK---KEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARR 116
Score = 52.0 bits (119), Expect = 2e-07
Identities = 32/86 (37%), Positives = 42/86 (48%)
Frame = +3
Query: 30 MSHRKFSAPRSWVYGILSQKEXXXXXXXXXXXXXKTTLANLFI*LLLSVIRPV*PTWLEN 209
MSHRKFSAPR G +K + + L + + +
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGM-THIVRD 59
Query: 210 LTVPASKINKKEIVEAVTIIETPPMV 287
+ P SK+NKKE+VEAVTI+ETPPMV
Sbjct: 60 VDKPGSKVNKKEVVEAVTIVETPPMV 85
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 87.4 bits (207), Expect = 4e-18
Identities = 39/71 (54%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
Frame = +2
Query: 32 VAQKIFSTPXMGLWDSIPKRGPVGHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 211
++ + FS P G PK+ +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 212 DRPGFK-NQQE 241
D+PG K N++E
Sbjct: 61 DKPGSKVNKKE 71
Score = 56.4 bits (130), Expect = 8e-09
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Frame = +1
Query: 46 FQHPXHGSMGFYPKKRSRRSSW*GQGVPERRP*QTCSFDCF--YRL*GRYDPRG*RT*PS 219
F P HG MGF PKKRSR + P+ + F Y+ + R S
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 220 RLQKSTRKXXXXXXXXXXXXXXFVSXVVGYIETPHGLRALXTVWAEHMSEDCRR 381
++ K K ++ V GY++TP G RAL T+WAEH+SE+ RR
Sbjct: 66 KVNK---KEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARR 116
Score = 52.0 bits (119), Expect = 2e-07
Identities = 32/86 (37%), Positives = 42/86 (48%)
Frame = +3
Query: 30 MSHRKFSAPRSWVYGILSQKEXXXXXXXXXXXXXKTTLANLFI*LLLSVIRPV*PTWLEN 209
MSHRKFSAPR G +K + + L + + +
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGM-THIVRD 59
Query: 210 LTVPASKINKKEIVEAVTIIETPPMV 287
+ P SK+NKKE+VEAVTI+ETPPMV
Sbjct: 60 VDKPGSKVNKKEVVEAVTIVETPPMV 85
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 31.9 bits (69), Expect = 0.19
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +1
Query: 46 FQHPXHGSMGFYPKKRSR 99
F P HG MGF PKKRSR
Sbjct: 6 FSAPRHGHMGFTPKKRSR 23
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 32 VAQKIFSTPXMGLWDSIPKRGPVGHRGKVKAFPK 133
++ + FS P G PK+ +RG++KAF K
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 30 MSHRKFSAPRSWVYGILSQK 89
MSHRKFSAPR G +K
Sbjct: 1 MSHRKFSAPRHGHMGFTPKK 20
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 31.9 bits (69), Expect = 0.19
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = +1
Query: 46 FQHPXHGSMGFYPKKRSR 99
F P HG MGF PKKRSR
Sbjct: 6 FSAPRHGHMGFTPKKRSR 23
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 32 VAQKIFSTPXMGLWDSIPKRGPVGHRGKVKAFPK 133
++ + FS P G PK+ +RG++KAF K
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 30 MSHRKFSAPRSWVYGILSQK 89
MSHRKFSAPR G +K
Sbjct: 1 MSHRKFSAPRHGHMGFTPKK 20
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,574,291
Number of Sequences: 27780
Number of extensions: 188901
Number of successful extensions: 487
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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