Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_D21
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...   111   1e-25
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    30   0.56 
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    29   0.98 
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    27   3.9  
AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore ...    27   3.9  
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ...    27   3.9  
U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical p...    27   5.2  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    27   5.2  
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   6.9  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   6.9  
Z83228-5|CAB05731.1|  148|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AL117195-21|CAB55033.2|  313|Caenorhabditis elegans Hypothetical...    26   9.1  
AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical...    26   9.1  
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    26   9.1  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    26   9.1  
AF016442-3|AAB65917.2|  597|Caenorhabditis elegans Hypothetical ...    26   9.1  
AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical ...    26   9.1  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score =  111 bits (268), Expect = 1e-25
 Identities = 54/76 (71%), Positives = 62/76 (81%)
 Frame = +2

Query: 146 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQH 325
           LNN VLFD+ TY+KLYKEV  YKLITP+VVSERLKVR SLA+  L EL+ KGL+K VV H
Sbjct: 40  LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHH 99

Query: 326 HGQVIYTRATKGDDPV 373
           HGQV+YTRATK  D +
Sbjct: 100 HGQVVYTRATKEADVI 115


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +3

Query: 27  PRRTRRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEK 134
           PRR RR    S  +  RRR+ P AA PRRR  P+ +
Sbjct: 464 PRR-RRSPSGSKSRSPRRRRSPAAA-PRRRQSPQRR 497


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 31  EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 132
           E REG G    +   +  RIRW+   +EE+V R+
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 285 SMSALLAREPRTFNLSDTTAGVISLYCG 202
           S++  ++ E   F+LSDT   ++ L+CG
Sbjct: 2   SVNRTISLENGKFDLSDTIVNIVELFCG 29


>AC024776-7|AAK68469.1|  411|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform a protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 294 SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 157
           S++S+ AL A +    NL  TTA  + LY   S    S + + NN+
Sbjct: 313 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 358


>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
           complex protein protein8, isoform b protein.
          Length = 1090

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 294 SLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT 157
           S++S+ AL A +    NL  TTA  + LY   S    S + + NN+
Sbjct: 228 SITSIKALEASQSAALNLVATTAKGVRLYFSVSTGPQSTMAMFNNS 273


>U00048-11|AAB53833.1|  995|Caenorhabditis elegans Hypothetical
           protein C05D11.1 protein.
          Length = 995

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +2

Query: 152 NQVLFDKPTYEKLYKEVPQYKLITPAVVSERL-KVRGSL 265
           N +LFD+   EKL++++ +  +  P  V E+L +VR +L
Sbjct: 694 NCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
 Frame = -3

Query: 203 GLPCTVSHTWV-YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 84
           GL    +  W  YQ    CS    TC   F W     W CR R++
Sbjct: 353 GLSNQYTDEWYEYQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 245 LKVRGSLARRALIELREKGLIKQVVQHHGQVIYTR 349
           L V+GS+ + A +ELR   +  Q +  H + +Y R
Sbjct: 191 LNVQGSMLKEAQLELRNASMRAQSLNKHLEEMYRR 225


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 72  RRRRKDPVAAKPRRRSGP 125
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 72  RRRRKDPVAAKPRRRSGP 125
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>Z83228-5|CAB05731.1|  148|Caenorhabditis elegans Hypothetical
           protein F52F12.5 protein.
          Length = 148

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 4   LSNSKMPAQEGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 132
           LS    P +E ++  G     +TE + +     S+EE++ Q+K
Sbjct: 18  LSEDDDPVKEKKKSKGNEKKSSTESKSKESKETSKEEDLAQKK 60


>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = -2

Query: 273 LLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPP 94
           ++ R+P ++    ++     + C  S   FS+V    +       R   L  F+F   PP
Sbjct: 340 IIRRQP-SYGSRSSSIATSQMRCDQSEIDFSWVNEEEDKLKRESKRIDSLPEFYFGMDPP 398

Query: 93  PDPS 82
           P PS
Sbjct: 399 PVPS 402


>AL117195-21|CAB55033.2|  313|Caenorhabditis elegans Hypothetical
           protein Y57A10A.28 protein.
          Length = 313

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 324 CWTTCLMRPFSLSSMSALLAREP 256
           CW +C++  F+ S +S  L  EP
Sbjct: 62  CWLSCMLMSFAGSFLSCFLLGEP 84


>AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical
           protein Y75B8A.37 protein.
          Length = 106

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 74  SVFFEAVWPKPSR 36
           S+FF A+WPKP R
Sbjct: 71  SLFFVAIWPKPVR 83


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 15  KDAXPRRTRRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEKF 137
           K +  R  RR  P      RRR  +    K RRRS  +++F
Sbjct: 177 KRSRSRERRRSPPRGTTSDRRRDDERRREKERRRSRSRDRF 217


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 15  KDAXPRRTRRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEKF 137
           K +  R  RR  P      RRR  +    K RRRS  +++F
Sbjct: 303 KRSRSRERRRSPPRGTTSDRRRDDERRREKERRRSRSRDRF 343


>AF016442-3|AAB65917.2|  597|Caenorhabditis elegans Hypothetical
           protein K12B6.2 protein.
          Length = 597

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 199 FLVQFLIRGFIKQHLVVQLVTNFSFGPLL 113
           FL  +L+R  +  +  ++L+ NF FG L+
Sbjct: 20  FLTDYLVRSEVSDYYRLRLLVNFLFGLLI 48


>AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3a protein.
          Length = 580

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +3

Query: 27  PRRTRRLRPNSLKK---HRRRRKDPVAAKPRRRSGPKEK 134
           PRR  R R    ++    RR R+ P    P RRS P+ +
Sbjct: 98  PRRRSRTRSRDRRRSPPRRRDRRTPPRRSPGRRSPPRSR 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,828,248
Number of Sequences: 27780
Number of extensions: 214303
Number of successful extensions: 712
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)