Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_D16
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   1.5  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   4.5  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   4.5  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   5.9  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      25   7.8  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   7.8  
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    25   7.8  

>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 259 SRTASGCRTTERDRGPTAACGLEIL*HSSCCRSNKVLCC 143
           S+   GC +TE+    T+ C  E     SCC S K  CC
Sbjct: 257 SQEKKGCCSTEK----TSCCSQE---KKSCCTSEKPSCC 288


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 153  TLLLRQQELCQRISSPHAAVGPRSRSVVLHPLAV 254
            TLL++Q+ LC   S    A+   S S V+ PL +
Sbjct: 1045 TLLIKQENLCNNGSLLFEAIEQNSLSKVMIPLNI 1078


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 205  LPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIXRTHDNY 339
            +P+  D      T L  GY  +  D   L  L+ +L I R HD Y
Sbjct: 1125 MPVPNDEFKKISTILARGYLALDEDESYLPLLSIHLLISRNHDPY 1169


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 447 FQQKVIFFWXFRYQRRHHQIIIQ 379
           F++ V   W FR QR   +IIIQ
Sbjct: 576 FREAVDAKWNFRRQRERQEIIIQ 598


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 286 YRCQAGYRHSRTASGCRTTERDRGPTAACGLEIL*HSSC 170
           Y  + GY    T    R ++ D   T   G + L HSSC
Sbjct: 139 YLMEDGYEFPLTRDLIRRSKSDADQTPPTGFKHLRHSSC 177


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 141 PQQSTLLLRQQELCQRISSPHAAVGPRSRSVVLHPLAVRL 260
           P Q +  L  +++C R+ + H   G  S   +L+ L  RL
Sbjct: 35  PHQDSKNLLYRQICGRLLAQHVFGGAGSTQPILNQLCKRL 74


>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 388 NNTVRPGTWLSSW*SHG 338
           N  VRPG + S W  HG
Sbjct: 363 NGFVRPGIYTSGWVKHG 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,760,460
Number of Sequences: 5004
Number of extensions: 30286
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)