Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_D16
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical ...    28   4.0  
Z71264-4|CAA95831.1|  348|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    27   5.3  

>AC006696-8|AAF39989.1|  120|Caenorhabditis elegans Hypothetical
           protein W08E12.2 protein.
          Length = 120

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 181 HSSCCRSNKVLCCG 140
           +SSCC SN   CCG
Sbjct: 88  YSSCCNSNNFSCCG 101


>Z71264-4|CAA95831.1|  348|Caenorhabditis elegans Hypothetical
           protein K07G5.5 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 184 RESQARMLPLDL--DPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIXRTHD 333
           R+  AR+L + L  D  + +  H +  Y G+       + L+E L +  THD
Sbjct: 268 RDQLARILNITLKHDKRIKYIDHSMIYYTGLNAQVELHIVLDEKLPLRITHD 319


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = -3

Query: 469 KQYGLAAIPAEGNIFLVXSVSASPPPDNNTV----RPGTWLSSW 350
           K +GLA    +   F+V SV    PP N  V    +PGT L SW
Sbjct: 416 KFHGLATSTKKVVHFVVSSVGLPDPPSNVQVEGGAQPGTLLVSW 459


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,069,964
Number of Sequences: 27780
Number of extensions: 185131
Number of successful extensions: 491
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)