Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_D13
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0557 + 19447367-19447517,19447630-19447730,19448359-194484...    30   1.9  
04_04_0057 + 22410167-22411330                                         29   3.2  
05_03_0373 - 13194723-13195847,13196219-13196809                       29   4.3  
01_03_0163 + 13346586-13347809                                         28   7.5  

>07_03_0557 +
           19447367-19447517,19447630-19447730,19448359-19448480,
           19448725-19448912,19449000-19449178,19449370-19449711,
           19449795-19449859,19450259-19450317,19450486-19450573,
           19450653-19450722,19450759-19450992,19451072-19451411,
           19451643-19451691,19452690-19452780,19453077-19453442
          Length = 814

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 481 QQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPERVXPQPPAAVLASSPF 633
           ++  S+ +   IFSN L++KV   SIF   +  P    P PP    A  PF
Sbjct: 597 EKRSSEERSTKIFSNLLDKKV---SIFSKKNAKPTTEVPPPPPPSSAPGPF 644


>04_04_0057 + 22410167-22411330
          Length = 387

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 526 WLEEKVDLPSIFENISEVPERVXPQPPAAVLASSP 630
           WLE +V  P    N+ + P    P P AA  + SP
Sbjct: 164 WLESRVTCPLCRANLEKPPPPPPPPPAAAAASPSP 198


>05_03_0373 - 13194723-13195847,13196219-13196809
          Length = 571

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 471 VSEFGGTWFQLRR*WRVETRSVIDFDLRCSAR 376
           V+E G  + QL+R WR + R ++D D R   R
Sbjct: 502 VNEAGQRFLQLQREWRSDARGIVDGDGRFKFR 533


>01_03_0163 + 13346586-13347809
          Length = 407

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 274 SWAAAIDLLTNDECRLLLEVED 339
           SW AA+D +T DE R LLE  D
Sbjct: 115 SWDAALDGITADEARALLESID 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,140,661
Number of Sequences: 37544
Number of extensions: 304437
Number of successful extensions: 765
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)