Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_D13
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AC024875-5|AAM44401.1|  203|Caenorhabditis elegans Rab family pr...    28   5.0  
Z82075-3|CAB04929.2|  784|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF293972-1|AAG02478.1|  784|Caenorhabditis elegans auxilin protein.    28   6.7  
U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AC024751-9|AAK21508.2|  677|Caenorhabditis elegans Pif1p dna hel...    27   8.8  
AB015041-1|BAA28677.1|  677|Caenorhabditis elegans PIF1 protein.       27   8.8  

>Z83233-8|CAB05759.2|  378|Caenorhabditis elegans Hypothetical
           protein K06B4.8 protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 180 KTPTSLDINPSGLLFAFVELNHYNNEC 260
           KTP  LD     +L+ F+ELN  N EC
Sbjct: 232 KTPALLDQTSCMVLYKFIELNITNEEC 258


>AC024875-5|AAM44401.1|  203|Caenorhabditis elegans Rab family
           protein 18, isoform b protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 469 NDLLQQLDSQCKQENIFSNWLEEKVDLPS 555
           N  +Q++D+ C  +NI    +  K+D+P+
Sbjct: 103 NHWMQEVDTYCTNDNIIKMMVANKIDMPN 131


>Z82075-3|CAB04929.2|  784|Caenorhabditis elegans Hypothetical
           protein W07A8.3 protein.
          Length = 784

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 478 LQQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPERVXPQ 600
           + Q++SQ   E   SN+ E++   P   +N+S+  ++  PQ
Sbjct: 593 VSQVNSQADFEAFLSNYPEQRQAAPQNTQNVSQKTQQTRPQ 633


>AF293972-1|AAG02478.1|  784|Caenorhabditis elegans auxilin protein.
          Length = 784

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 478 LQQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPERVXPQ 600
           + Q++SQ   E   SN+ E++   P   +N+S+  ++  PQ
Sbjct: 593 VSQVNSQADFEAFLSNYPEQRQAAPQNTQNVSQKTQQTRPQ 633


>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
 Frame = +2

Query: 107 VCLHAQYKNACQNGALTGQISPSSQNTNIIRHQ----SLWTFIRIRGTK-----SLQQ*V 259
           +CLH  +K  C N    G   PS+ N   +R       L  FI I         ++ Q  
Sbjct: 69  ICLHKNFKKECFNFKGEGTAIPSTFNEETVRPWVELFHLEIFICILNFTLWIYLAIDQWK 128

Query: 260 RVRRSHGLRPSICSLTMSAVCCSKLRISSMMIVICLK-TFRALQRRSKSITLRVS 421
           R+ +   ++ SI  L++S  C   +RI    + IC+   + +     KSI L++S
Sbjct: 129 RIEKD--VKTSISMLSLS--CSIGVRILFSTVAICISLVYGSKPSLIKSIVLQLS 179


>AC024751-9|AAK21508.2|  677|Caenorhabditis elegans Pif1p dna
           helicase (yeast) homologprotein 1 protein.
          Length = 677

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 475 LLQQLDSQCKQENIFSNWLEEKVDLPSIFEN-ISEVPERVXPQPPAAVLASSPFVTSQ 645
           + Q  +   ++ N+F   L+ K+D+  + ++ IS VP R   +PPA     SP   S+
Sbjct: 107 MFQMFNCAPRKLNVFMKSLQAKLDIMKMEKSPISAVP-RQFSRPPAVFSVLSPLTISE 163


>AB015041-1|BAA28677.1|  677|Caenorhabditis elegans PIF1 protein.
          Length = 677

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +1

Query: 475 LLQQLDSQCKQENIFSNWLEEKVDLPSIFEN-ISEVPERVXPQPPAAVLASSPFVTSQ 645
           + Q  +   ++ N+F   L+ K+D+  + ++ IS VP R   +PPA     SP   S+
Sbjct: 107 MFQMFNCAPRKLNVFMKSLQAKLDIMKMEKSPISAVP-RQFSRPPAVFSVLSPLTISE 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,888,004
Number of Sequences: 27780
Number of extensions: 272005
Number of successful extensions: 787
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)