Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_D09
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 244 9e-66
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 236 2e-63
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 210 1e-55
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 204 1e-53
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 147 1e-36
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 87 2e-18
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 66 3e-12
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 46 6e-06
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces... 30 0.25
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.77
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos... 27 3.1
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 27 3.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.1
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 25 7.2
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 7.2
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 25 7.2
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 25 9.5
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 25 9.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 9.5
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 244 bits (597), Expect = 9e-66
Identities = 113/143 (79%), Positives = 128/143 (89%)
Frame = +2
Query: 104 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 283
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 284 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLT 463
TIFDAKRLIGRKF+D VQ+DMKHWPF+V+S GKP ++V YKGE KTF PEE+SSMVL
Sbjct: 64 TIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLM 123
Query: 464 KMKETAEAYLGKTVQNAVITVPA 532
KM+ETAEAYLG V +AV+TVPA
Sbjct: 124 KMRETAEAYLGGKVTDAVVTVPA 146
Score = 79.4 bits (187), Expect = 4e-16
Identities = 42/75 (56%), Positives = 49/75 (65%)
Frame = +3
Query: 417 KTKPFSPRKSVPWCLRK*RKLPKLISAKLCRMQLSRFPRYFNDSQRQATKDAGTISGLNV 596
+TK F+P + L K R+ + + P YFNDSQRQATKDAG I+GLNV
Sbjct: 108 ETKTFTPEEISSMVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNV 167
Query: 597 LRIINEPTAAAIAYG 641
LRIINEPTAAAIAYG
Sbjct: 168 LRIINEPTAAAIAYG 182
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 236 bits (578), Expect = 2e-63
Identities = 109/143 (76%), Positives = 126/143 (88%)
Frame = +2
Query: 104 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 283
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 284 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLT 463
TIFDAKRLIGR+F D VQ+DMKHWPF+V+ GKP I+V +KGE KTF PEE+SSMVL
Sbjct: 64 TIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVLL 123
Query: 464 KMKETAEAYLGKTVQNAVITVPA 532
KM+E+AEA+LG V +AV+TVPA
Sbjct: 124 KMRESAEAFLGGKVTDAVVTVPA 146
Score = 79.0 bits (186), Expect = 6e-16
Identities = 42/75 (56%), Positives = 49/75 (65%)
Frame = +3
Query: 417 KTKPFSPRKSVPWCLRK*RKLPKLISAKLCRMQLSRFPRYFNDSQRQATKDAGTISGLNV 596
+TK F+P + L K R+ + + P YFNDSQRQATKDAG I+GLNV
Sbjct: 108 ETKTFTPEEISSMVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNV 167
Query: 597 LRIINEPTAAAIAYG 641
LRIINEPTAAAIAYG
Sbjct: 168 LRIINEPTAAAIAYG 182
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 210 bits (513), Expect = 1e-55
Identities = 97/143 (67%), Positives = 116/143 (81%)
Frame = +2
Query: 104 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 283
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP N
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 284 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLT 463
T+FDAKRLIGR++ED Q D+KHWPF+V+ + G P I+V Y GE K F +E+S+MVLT
Sbjct: 68 TVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLT 127
Query: 464 KMKETAEAYLGKTVQNAVITVPA 532
KMKE +EA L K V+ AVITVPA
Sbjct: 128 KMKEISEAKLNKRVEKAVITVPA 150
Score = 72.5 bits (170), Expect = 5e-14
Identities = 38/73 (52%), Positives = 48/73 (65%)
Frame = +3
Query: 423 KPFSPRKSVPWCLRK*RKLPKLISAKLCRMQLSRFPRYFNDSQRQATKDAGTISGLNVLR 602
K F+ ++ L K +++ + K + P YF+DSQR ATKDAG I+GLNVLR
Sbjct: 114 KQFTAQEISAMVLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLR 173
Query: 603 IINEPTAAAIAYG 641
IINEPTAAAIAYG
Sbjct: 174 IINEPTAAAIAYG 186
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 204 bits (497), Expect = 1e-53
Identities = 92/142 (64%), Positives = 117/142 (82%)
Frame = +2
Query: 107 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNT 286
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP NT
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 287 IFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTK 466
IFD KRLIGRKF++ T+ D+K +PF +V+D +P ++V G+ K F PEE+S+M+L+K
Sbjct: 98 IFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMILSK 157
Query: 467 MKETAEAYLGKTVQNAVITVPA 532
MK+TAEAYLGK V +AV+TVPA
Sbjct: 158 MKQTAEAYLGKPVTHAVVTVPA 179
Score = 80.2 bits (189), Expect = 2e-16
Identities = 40/75 (53%), Positives = 50/75 (66%)
Frame = +3
Query: 417 KTKPFSPRKSVPWCLRK*RKLPKLISAKLCRMQLSRFPRYFNDSQRQATKDAGTISGLNV 596
K K F+P + L K ++ + K + P YFND+QRQATKDAGTI+GLNV
Sbjct: 141 KKKKFTPEEISAMILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNV 200
Query: 597 LRIINEPTAAAIAYG 641
+RI+NEPTAAAIAYG
Sbjct: 201 IRIVNEPTAAAIAYG 215
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 147 bits (356), Expect = 1e-36
Identities = 71/147 (48%), Positives = 97/147 (65%), Gaps = 1/147 (0%)
Frame = +2
Query: 95 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 271
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 272 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 451
NP NT F KRLIGR+F++ VQ D+K P+++V + KT+ P ++
Sbjct: 109 NPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNG---DAWLEARGKTYSPSQIGG 165
Query: 452 MVLTKMKETAEAYLGKTVQNAVITVPA 532
+L+KM+ETA YLGK V+NAV+TVPA
Sbjct: 166 FILSKMRETASTYLGKDVKNAVVTVPA 192
Score = 76.2 bits (179), Expect = 4e-15
Identities = 38/78 (48%), Positives = 50/78 (64%)
Frame = +3
Query: 408 IRVKTKPFSPRKSVPWCLRK*RKLPKLISAKLCRMQLSRFPRYFNDSQRQATKDAGTISG 587
+ + K +SP + + L K R+ K + + P YFNDSQRQATK AG I+G
Sbjct: 151 LEARGKTYSPSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAG 210
Query: 588 LNVLRIINEPTAAAIAYG 641
LNVLR++NEPTAAA+AYG
Sbjct: 211 LNVLRVVNEPTAAALAYG 228
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 87.4 bits (207), Expect = 2e-18
Identities = 47/148 (31%), Positives = 82/148 (55%), Gaps = 1/148 (0%)
Frame = +2
Query: 92 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 271
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 272 NPNNTIFDAKRLIGRKFEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 448
N NT+ KRL GR ++D ++ + ++ G KV Y E+ F ++
Sbjct: 63 NFRNTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLI 122
Query: 449 SMVLTKMKETAEAYLGKTVQNAVITVPA 532
+ TK+K AEA L +V + VI++PA
Sbjct: 123 AAYFTKIKAIAEAELIGSVSDVVISIPA 150
Score = 44.4 bits (100), Expect = 1e-05
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +3
Query: 528 PRYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYG 641
P +F D QR+A +A I+GLN LR++N+ AAA+ YG
Sbjct: 149 PAWFTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYG 186
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 66.5 bits (155), Expect = 3e-12
Identities = 38/147 (25%), Positives = 75/147 (51%), Gaps = 6/147 (4%)
Frame = +2
Query: 107 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNT 286
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ N +N+
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86
Query: 287 IFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGE------DKTFFPEEVS 448
+ + + L+G+ ++ T+ H+ V+ G+ K+ + + +K E S
Sbjct: 87 VTNFRDLLGKSHDELTLH--HCHYSANPVNVEGQIGFKITVQEDEESDPKEKILTAHEAS 144
Query: 449 SMVLTKMKETAEAYLGKTVQNAVITVP 529
L ++ E+AE +LG V V++VP
Sbjct: 145 VRHLRRLTESAEDFLGTKVNGCVMSVP 171
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +3
Query: 528 PRYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIA 635
P YF D+QR+A + A +GL VL++I++P A +A
Sbjct: 171 PVYFTDAQRKALESAANEAGLPVLQLIHDPAAVILA 206
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 45.6 bits (103), Expect = 6e-06
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 3/144 (2%)
Frame = +2
Query: 107 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 283
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P +
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPAH 84
Query: 284 TIFDAKRLIGRK-FEDATVQADMKHWPFEVVSDGGKPKIKVAYK-GEDKTFFPEEVSSMV 457
+I + K L+ E VQ +P + + + +++ +++ + EE+ +M
Sbjct: 85 SIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEIIAMT 144
Query: 458 LTKMKETAEAYLGKTVQNAVITVP 529
+ AE + + + V+TVP
Sbjct: 145 MEHYISLAEEMAHEKITDLVLTVP 168
>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 451
Score = 30.3 bits (65), Expect = 0.25
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +2
Query: 212 VAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKP 391
+ F+D E GD A + P + AK L+G+ + + D P++V+ D P
Sbjct: 125 IIFSDDEPYPGDVASRIYFLVPKFELPRAKELVGKNIDAKYITWDEDENPYQVLYDRLGP 184
Query: 392 KIKVAYKGEDKTFFPE 439
+K+ G + F +
Sbjct: 185 -LKLMIDGTVRNFIAQ 199
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.77
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 99 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 194
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 417 KTKPFSPRKSVPWCLRK*RKLPKLISAKLCRMQLSRFPRY 536
+ K KSVP C + + K IS K+ R+Q + P Y
Sbjct: 16 RPKDIKSIKSVPICEKHRASVVKDISRKISRIQSATLPEY 55
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 106 CGCFCHFVFLISL-VTCSLKQLSKRARL 26
C CFC + FL+S+ S+ QL R ++
Sbjct: 384 CFCFCQYPFLLSMGAKISILQLDARRKM 411
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = -2
Query: 537 SNAGTVITAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKG 358
S+ + I++ T+L + S + +S+ + S +LSS + + + SL+T
Sbjct: 612 SSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSIST---IPISSSLSTYSS 668
Query: 357 QCFMSACTVASSN 319
S+ T+ SS+
Sbjct: 669 SVIPSSSTLVSSS 681
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3
Query: 110 LLRVLLPFCIFNQSCYLFXKTTQQTCAI 27
L +L PFCI + LF KT C I
Sbjct: 132 LANLLPPFCISQKIVNLFFKTLNVVCPI 159
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +1
Query: 85 QNGKSTRSRNRSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCRQEPG 264
+NGK T +R +S + W P++E R G D + V R + + +EP
Sbjct: 477 RNGKKTPTRTKSRMQQFINWFKPSKE----RSSNGNSDSASPPPVPRLSITRSQVSREP- 531
Query: 265 GDEPQQ 282
++P++
Sbjct: 532 -EKPEE 536
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 185 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCI 81
G W SP S + H ++++ +F +RVL C+
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCM 310
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 415 TLICYLDLRFASITDNLERPVLHVGLHSSIFELTSDETFGI 293
T I L + S+TDN+ER + +G + I +TS F +
Sbjct: 142 TNIALLLATYPSVTDNIER-FIFMGGSTGIGNITSQAEFNV 181
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 655 PFCQDP*AIAAAVGSLMIRRTFKP 584
P Q P A+A+ GSL+ R F+P
Sbjct: 272 PSAQGPYALASNYGSLLARIVFRP 295
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.0 bits (52), Expect = 9.5
Identities = 23/85 (27%), Positives = 39/85 (45%)
Frame = -2
Query: 534 NAGTVITAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQ 355
N+ T IT+ V S + S+ +TSS S+P+ ++ +L +T+S G
Sbjct: 883 NSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTGL 942
Query: 354 CFMSACTVASSNLRPMRRLASNIVL 280
+ T +SS L + S+ VL
Sbjct: 943 NTSTPIT-SSSVLNSSTPITSSTVL 966
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,178
Number of Sequences: 5004
Number of extensions: 58433
Number of successful extensions: 250
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -