Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_D06
         (390 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   1.0  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   2.4  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    25   3.1  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    24   9.5  
SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces...    24   9.5  
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    24   9.5  

>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 97  SDYVNLCITIVSXKLEEFFKHLIYFFYQ 180
           + +  LCI   + KL++FF H ++   Q
Sbjct: 468 NSFEQLCINFTNEKLQQFFNHYMFVLEQ 495


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 97  SDYVNLCITIVSXKLEEFFKHLIYFFYQ 180
           + +  LCI   + KL++FF H ++   Q
Sbjct: 455 NSFEQLCINYTNEKLQQFFNHHMFVLEQ 482


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 240 NHLYSVQKKNKLNIW-LESVKLIKEIN 163
           NHL  V+  ++L+IW L  VKLI  ++
Sbjct: 310 NHLDGVESVHELHIWQLSDVKLIATVH 336


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 97  SDYVNLCITIVSXKLEEFFKHL 162
           S Y+   +  +S  LEEF++HL
Sbjct: 215 SGYMGSLVNSMSLMLEEFYRHL 236


>SPAC29A4.13 |||urease accessory protein UreF|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 228 SVQKKNKLNIWLESVKLIKEINQVFK 151
           ++Q K+ LNIW +S+        VFK
Sbjct: 95  TMQGKSLLNIWTKSLSFFVTSTDVFK 120


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 103 YVNLCITIVSXKLEEFFKHLIYFFYQFYTFQPNI*LIF 216
           ++N+   IVS    +   HL++    FY+F P I  +F
Sbjct: 116 FINMPSMIVSAFSHQSGWHLLFNMVAFYSFAPAIVDVF 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 935,556
Number of Sequences: 5004
Number of extensions: 14168
Number of successful extensions: 38
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)