Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_D02
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75713-9|CAB00053.1|  235|Caenorhabditis elegans Hypothetical pr...   337   3e-93
Z75713-8|CAB00056.1|  234|Caenorhabditis elegans Hypothetical pr...   333   5e-92
M73827-1|AAA27983.1|  234|Caenorhabditis elegans casein kinase I...   330   7e-91
Z70211-1|CAA94157.2|  299|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF067944-2|AAY86264.1|   97|Caenorhabditis elegans Hypothetical ...    27   8.8  
AF047656-13|AAC05105.1|  313|Caenorhabditis elegans Collagen pro...    27   8.8  

>Z75713-9|CAB00053.1|  235|Caenorhabditis elegans Hypothetical
           protein T01G9.6b protein.
          Length = 235

 Score =  337 bits (829), Expect = 3e-93
 Identities = 149/201 (74%), Positives = 168/201 (83%)
 Frame = +2

Query: 44  MSSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXX 223
           MSSSEEVSWI WFC LRGNEFFCEVDE+YI D+FNLTGLNEQVP YR+ALDM        
Sbjct: 1   MSSSEEVSWITWFCGLRGNEFFCEVDEEYIQDRFNLTGLNEQVPKYRQALDMILDLEPED 60

Query: 224 XXXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPML 403
                   +DLVEQA+E+LYGLIHARYILTNRGISQM++K++  DFG CPRVYCE QPML
Sbjct: 61  DIEDNATNTDLVEQAAEMLYGLIHARYILTNRGISQMVEKWRDHDFGVCPRVYCENQPML 120

Query: 404 PIGLSDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPA 583
           PIGLSDVP EAMVKLYCPRC DV+ P+SSRH HTDG+YFGTGFPHM+F VHPD RP+RP 
Sbjct: 121 PIGLSDVPGEAMVKLYCPRCNDVFVPRSSRHQHTDGSYFGTGFPHMLFFVHPDLRPRRPV 180

Query: 584 SQFVPRLYGFKIHPLAYQIQQ 646
           +QFVP+LYGFKIHP+AY  Q+
Sbjct: 181 TQFVPKLYGFKIHPVAYGGQE 201


>Z75713-8|CAB00056.1|  234|Caenorhabditis elegans Hypothetical
           protein T01G9.6a protein.
          Length = 234

 Score =  333 bits (819), Expect = 5e-92
 Identities = 149/201 (74%), Positives = 168/201 (83%)
 Frame = +2

Query: 44  MSSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXX 223
           MSSSEEVSWI WFC LRGNEFFCEVDE+YI D+FNLTGLNEQVP YR+ALDM        
Sbjct: 1   MSSSEEVSWITWFCGLRGNEFFCEVDEEYIQDRFNLTGLNEQVPKYRQALDMILDLEPDD 60

Query: 224 XXXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPML 403
                   +DLVEQA+E+LYGLIHARYILTNRGISQM++K++  DFG CPRVYCE QPML
Sbjct: 61  IEDNAT-NTDLVEQAAEMLYGLIHARYILTNRGISQMVEKWRDHDFGVCPRVYCENQPML 119

Query: 404 PIGLSDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPA 583
           PIGLSDVP EAMVKLYCPRC DV+ P+SSRH HTDG+YFGTGFPHM+F VHPD RP+RP 
Sbjct: 120 PIGLSDVPGEAMVKLYCPRCNDVFVPRSSRHQHTDGSYFGTGFPHMLFFVHPDLRPRRPV 179

Query: 584 SQFVPRLYGFKIHPLAYQIQQ 646
           +QFVP+LYGFKIHP+AY  Q+
Sbjct: 180 TQFVPKLYGFKIHPVAYGGQE 200


>M73827-1|AAA27983.1|  234|Caenorhabditis elegans casein kinase II
           beta subunit protein.
          Length = 234

 Score =  330 bits (810), Expect = 7e-91
 Identities = 148/201 (73%), Positives = 167/201 (83%)
 Frame = +2

Query: 44  MSSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXX 223
           MSSSEEVSWI WFC LRGNEFFCEVDE+YI D+FNLTGLNEQVP YR+ALDM        
Sbjct: 1   MSSSEEVSWITWFCGLRGNEFFCEVDEEYIQDRFNLTGLNEQVPKYRQALDMILDLEPDD 60

Query: 224 XXXXXXXESDLVEQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPML 403
                   +DLVEQA+E+LYGLIHARYILTNRGISQM++K++  DFG CPRVYCE QPML
Sbjct: 61  IEDNAT-NTDLVEQAAEMLYGLIHARYILTNRGISQMVEKWRDHDFGVCPRVYCENQPML 119

Query: 404 PIGLSDVPAEAMVKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPA 583
           PIGLSDVP EAMVKLYCPRC  V+ P+SSRH HTDG+YFGTGFPHM+F VHPD RP+RP 
Sbjct: 120 PIGLSDVPGEAMVKLYCPRCNMVFVPRSSRHQHTDGSYFGTGFPHMLFFVHPDLRPRRPV 179

Query: 584 SQFVPRLYGFKIHPLAYQIQQ 646
           +QFVP+LYGFKIHP+AY  Q+
Sbjct: 180 TQFVPKLYGFKIHPVAYGGQE 200


>Z70211-1|CAA94157.2|  299|Caenorhabditis elegans Hypothetical
           protein K11E4.1 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 35  KRKMSSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQVPHY 181
           + K   +E++ +  +     GNE F    +  + DKFN+   N+Q+P +
Sbjct: 170 EEKWWPAEQMFYFGYGSPRCGNEDFAYYVDSSLADKFNIVWFNDQIPEF 218


>AF067944-2|AAY86264.1|   97|Caenorhabditis elegans Hypothetical
           protein K10C9.9 protein.
          Length = 97

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +2

Query: 5   LPSSVANQGTKRKMSSSEEVSWIAWFCTLRGNEFFCEVDEDYINDKFNLTGLNEQ 169
           +P++VA   T+ K +S EE       C +R   F  ++DE ++N+K +L    ++
Sbjct: 23  IPTTVA---TETKCTSQEEAVRAVQACIMRLGIFLHQLDELHMNNKTDLADYKKE 74


>AF047656-13|AAC05105.1|  313|Caenorhabditis elegans Collagen
           protein 116 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 380 YCECQPMLPIGLSDVPAE 433
           YC+C P  PIG +D  +E
Sbjct: 286 YCQCPPRTPIGSADADSE 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,739,988
Number of Sequences: 27780
Number of extensions: 345872
Number of successful extensions: 918
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)