Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_D01
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0507 + 3655570-3655573,3655648-3655832                           82   2e-16
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492...    34   0.069
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    32   0.28 
02_02_0664 - 12747888-12747900,12748161-12748229,12748332-127483...    30   1.1  

>06_01_0507 + 3655570-3655573,3655648-3655832
          Length = 62

 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 38/59 (64%), Positives = 44/59 (74%)
 Frame = +2

Query: 254 GKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAKRRIQYNRRFVNVVQTFGRRRGPNSN 430
           GKVHGSLARAGKV+GQTPKV          GRA +R+QYNRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60


>04_04_0165 +
           23247265-23247472,23248115-23248407,23249182-23249239,
           23249302-23250014
          Length = 423

 Score = 33.9 bits (74), Expect = 0.069
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 61  RAIDTRPGRQWPGVHWSDQGTHSYSCCSW**RPYSIIMWS 180
           +A+  RP    PG+HW++Q    YS CS    P  I MW+
Sbjct: 368 KAMSMRPDAH-PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406


>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
            3764013-3764961,3766967-3767064,3768144-3768284,
            3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 139  SKSTNAFLDLTNGLLAIDVQDVCRLPSDMQLHSC 38
            S + N+ LD T+  ++ D Q+V  LP D   HSC
Sbjct: 1455 SANKNSLLDQTSENVSTDHQEVSMLPQDQHYHSC 1488


>02_02_0664 -
           12747888-12747900,12748161-12748229,12748332-12748395,
           12749540-12749558,12749777-12749843,12749934-12749953,
           12750079-12750248,12751646-12751823
          Length = 199

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 85  RQWPGVHWSDQGTHSY 132
           R WPG+HWSD  T  Y
Sbjct: 51  RIWPGLHWSDSSTPLY 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,695,883
Number of Sequences: 37544
Number of extensions: 199548
Number of successful extensions: 496
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)