Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_C23
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   169   2e-42
AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear recep...    29   2.2  
AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormo...    29   2.2  
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical p...    28   6.7  
U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical p...    28   6.7  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  169 bits (410), Expect = 2e-42
 Identities = 79/139 (56%), Positives = 107/139 (76%), Gaps = 1/139 (0%)
 Frame = +2

Query: 38  KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 217
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 218 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSRTLTSVY 394
           +LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+
Sbjct: 67  QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126

Query: 395 DAILEDLVFPAEIVGKRIR 451
           DA L++LV+PAE+VG+RIR
Sbjct: 127 DAWLDELVYPAEVVGRRIR 145



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 30/47 (63%), Positives = 39/47 (82%)
 Frame = +3

Query: 453 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPEP 593
           VKLDG ++ KVHLDK+ QT + HK+  F SVY+KLTG++VTFEFP+P
Sbjct: 146 VKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDP 192


>AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear receptor
           NHR-110 protein.
          Length = 412

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 502 WFLSKCTLMSCEPSNLTPDALAYDLSREDQVLEDS 398
           WF   C L  C    ++P+ + YD  + + +L+ S
Sbjct: 72  WFCKTCRLTRCLSIGMSPENIQYDRDKFESILKSS 106


>AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 110, isoform b protein.
          Length = 424

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 502 WFLSKCTLMSCEPSNLTPDALAYDLSREDQVLEDS 398
           WF   C L  C    ++P+ + YD  + + +L+ S
Sbjct: 84  WFCKTCRLTRCLSIGMSPENIQYDRDKFESILKSS 118


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 102 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 212
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +2

Query: 23  VKMSTKIIKASGAEADSFE---TSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 193
           +K + K  K   AEA+ ++   T  S+ L ELE       Q +E +  K++E+E+ NK+ 
Sbjct: 242 LKANEKARKEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQL 301

Query: 194 I 196
           +
Sbjct: 302 V 302


>U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical
           protein F29B9.2b protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 453 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 584
           VK+ GS      +D   Q+T   K+DTF+ +++    R + + F
Sbjct: 379 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 422


>U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical
           protein F29B9.2a protein.
          Length = 910

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 453 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 584
           VK+ GS      +D   Q+T   K+DTF+ +++    R + + F
Sbjct: 392 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 435


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 124 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 38
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,909,513
Number of Sequences: 27780
Number of extensions: 287271
Number of successful extensions: 869
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)